View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_96 (Length: 281)
Name: NF11930_high_96
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_96 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 37232768 - 37233025
Alignment:
| Q |
18 |
taaccaagctgactaatatcgcaaattcaacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaattctgcccttt |
117 |
Q |
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| T |
37232768 |
taaccaagctgactaatatcgcaaattcaacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaattctgcccttt |
37232867 |
T |
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| Q |
118 |
ctttttatgtggttgattgctatcatatctaatttgcagttttgaaatcaaagatccgttccttagtttctttcgaaggatatagcatctttccccgttt |
217 |
Q |
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| T |
37232868 |
ctttttatgtggttgattgctatcatatctaatttgcagttttgaaatcaaagatccgttccttagtttctttcgaaggatatagcatctttccccgttt |
37232967 |
T |
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| Q |
218 |
gcgtttaaagaatattaccatgataaatccaccttattcttactactaatcaattatt |
275 |
Q |
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| T |
37232968 |
gcgtttaaagaatattaccatgataaatccaccttattcttactactaatcaattatt |
37233025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 37385160 - 37385086
Alignment:
| Q |
38 |
gcaaattcaacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaattctgc |
112 |
Q |
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| T |
37385160 |
gcaaattcaacagataacactcttcatgtggctggcacatttggttacatgccacctgagtatgatgaattctgc |
37385086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 37218119 - 37218189
Alignment:
| Q |
38 |
gcaaattcaacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaatt |
108 |
Q |
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| T |
37218119 |
gcaaattcagcagataacactgttcatgtggcaggcacatttggttacatgccacctgagtatgatgaatt |
37218189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 37223833 - 37223903
Alignment:
| Q |
38 |
gcaaattcaacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaatt |
108 |
Q |
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|||| |||| ||||||||||| |||| ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
37223833 |
gcaagttcagcagataacactgatcatgtggcaggcacatttggttacatgccacctgagtatgatgaatt |
37223903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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