View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_high_99 (Length: 279)
Name: NF11930_high_99
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_99 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27524090 - 27523842
Alignment:
| Q |
1 |
tggtttggttgttgaagaaaaaatgcagcatgcatttattaccaaaggcaagtagagttaccgttaatagacgaggacatagagttagttaatgactcgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27524090 |
tggtttggttgttgaagaaaaaatgcagcatgcatttattaccaaaggcaagtag--ttaccgttaatagacgaggacatagagttagttaatgactcgt |
27523993 |
T |
|
| Q |
101 |
tcaaatataagaatattatagtattatacgaataatggagaaaatagctttnnnnnnnnnnnnnnnngtctctaaaatgaatatgaaataattttattta |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
27523992 |
tcaaatataagaatat--------tatacgaataatggagaaaatagctttaaaaaattgaaaaaaagtctctaaaatgaata---------tttattta |
27523910 |
T |
|
| Q |
201 |
ccaacatttgcaattgaaattcattatttttatgcctacaaattataagttgtcatcaccaagttctt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27523909 |
ccaacatttgcaattgaaattcattatttttatgcctacaaattataagttgttatcaccaagttctt |
27523842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University