View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_1 (Length: 1061)
Name: NF11930_low_1
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 1 - 894
Target Start/End: Original strand, 36017630 - 36018529
Alignment:
| Q |
1 |
ttctttactaagggtgaagtaatacccttttgatcattat-----------cctaatagtattcttctattctagaaatgaagtgacacccttttgatca |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36017630 |
ttctttactaagggtgaagtaatacccttttgatcattatttgattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatca |
36017729 |
T |
|
| Q |
90 |
aaggtatatgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaagaaaaataaaatggcacattga |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36017730 |
aaggtatatgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaaatttgaacctagcacaagaaaaataaagtggcacattga |
36017829 |
T |
|
| Q |
190 |
tgggaacaatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttcttannnnnnnggcgttaatcttccggtttc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| |
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|
| T |
36017830 |
tgggaacaatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttatt--ttttttggctttaaccttccggtttc |
36017927 |
T |
|
| Q |
290 |
caggggaaagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacat |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
36017928 |
caggggaaagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacccaagaattgaactcgggttctccctaacat |
36018027 |
T |
|
| Q |
390 |
ttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaattttatctaaactttaaaagtactaaatttaatgtaaatcttatagtaaa |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018028 |
ttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaattttatctaaactttaaaagtactaaatttaatgtaaatcttatagtaaa |
36018127 |
T |
|
| Q |
490 |
cttttcatctaatccaaaagttactttcttccacttctagttttttgttgctgaatatatcaattccagttaaaattaagatttcaagacaaaatccatt |
589 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018128 |
cttttcatctaatccaaaagttattttcttccacttctagttttttgttgctgaatatatcacttccagttaaaattaagatttcaagacaaaatccatt |
36018227 |
T |
|
| Q |
590 |
ttgtctagctatattcaaagatatgtgatactactaaaatcaaatttcatcaagacaaatcaatttttacagtcttattatttactgtaaaatcaaacac |
689 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36018228 |
ttgtctagc----atcaaagatatgtaatactactaaaatcaaatttcatcaagacaaatcaatttttacagtcttattttttactgtaaaatcaaacac |
36018323 |
T |
|
| Q |
690 |
tcacaatctttgtttcaaacagaattgtgagaaatatg-aatgtccactattgtaagaaaagtgacaaaaaggagaggcttagtgtgaagcaaaacaatg |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36018324 |
tcacaatctttgtttcaaacagaattgtgagaaatatgaaatgtccactattgtaagaaaagtgacagaaaggagaggcttagtgtgaagcaaaacaatg |
36018423 |
T |
|
| Q |
789 |
aagtgaagttgctaagaagtttgctttcctacttaaagccaaaagtgcttattaagatgcaactgcttattactagcgtcatgattcatccaaacttcac |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018424 |
aagtgaagttgctaagaagtttgctttcctacttaaagccaaaagtgcttattaagatgcaactgcttattactagcgtcatgattcatccaaacttcac |
36018523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 445 - 898
Target Start/End: Original strand, 28889835 - 28890291
Alignment:
| Q |
445 |
tctaaactttaaaagtactaaatttaatgtaaatcttatagtaaacttttcatctaatccaaaagttactttcttccacttctagttttttgttgctgaa |
544 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
28889835 |
tctaaactttaaaattactaaatttaatgtaaaacttatagtaaacttttcatctaatccaaaagtcactttcttccaattagtattttttgttgctgaa |
28889934 |
T |
|
| Q |
545 |
tatatcaa--ttccagttaaaattaagatttcaagacaaaatccattttgtctagctatattcaaagatatgtgatactactaaaatcaaatttcatcaa |
642 |
Q |
| |
|
| ||||| ||| ||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||| | | ||||||| |||||| |||||| |
|
|
| T |
28889935 |
tgtatcacacttctagttaaaattaagatttgaagacaaaatccatcttatctagctataatcaaagatatgtaaatcaactaaaaccaaattccatcaa |
28890034 |
T |
|
| Q |
643 |
gacaaatcaatttttacagtcttattattt--actgtaaaatcaaacactcacaatctttgtttcaaacagaattgtgagaaatatgaatgtccactatt |
740 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| ||||||||||||| ||| |||||||||| ||| |||||| |||||||||||||||| ||| |||||| |
|
|
| T |
28890035 |
gacaaatcaattttaatagtcttattttttttactgtaaaatcaagcacaaacaatctttgattccaacagatttgtgagaaatatgaaagtctactatt |
28890134 |
T |
|
| Q |
741 |
gtaagaaaagtgacaaaaaggagaggcttagtgtgaagcaaaacaatgaagtgaagttgctaagaagtttgctttcctacttaaagccaaaagtgcttat |
840 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
28890135 |
gtaagaaaactgacaaaaaggggaggcttagtgtgaagcaagacaatgaagtgaagttgctaagaag-ctgctttcctacttaaagccaaaagtgcttgt |
28890233 |
T |
|
| Q |
841 |
taagatgcaactgcttattactagcgtcatgattcatccaaacttcactttagcctaa |
898 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28890234 |
taagatgcaactgcttattattagcgtcatgattcatccaaacttccctttagcctaa |
28890291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 28889455 - 28889655
Alignment:
| Q |
1 |
ttctttactaagggtgaagtaatacccttttgatcatta---tcctaatagtattcttctattctagaaatgaagtgacacccttttgatcaaaggtata |
97 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
28889455 |
ttctttaataagggtgaagtaatatccttttgatcattattatcctaatagtgttcttatattctagaaatgaagtgacacccttttgatcaaaagttta |
28889554 |
T |
|
| Q |
98 |
tgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaagaaaaataaaatggcacattgatgggaaca |
197 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28889555 |
tgttatgtatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaaca |
28889654 |
T |
|
| Q |
198 |
a |
198 |
Q |
| |
|
| |
|
|
| T |
28889655 |
a |
28889655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 9378320 - 9378405
Alignment:
| Q |
348 |
aattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgctt |
433 |
Q |
| |
|
||||||||||| || ||| |||||||| ||||||| ||| | |||| ||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
9378320 |
aattgttccacacagtaatggaactcggattctcccgaacgatccgtccttggtgaagttcattaaccacttgatctcaattgctt |
9378405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 24667096 - 24667003
Alignment:
| Q |
349 |
attgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaattt |
442 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||| |||| |||||| || || ||||||||||||||||||| | ||||| ||| |||||||| |
|
|
| T |
24667096 |
attgttccacccaagaattgaactcaggttctcctgaacaattcgtcctttgtaaaactcattaaccacttgagcccaattacttggttaattt |
24667003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 10877170 - 10877095
Alignment:
| Q |
364 |
aatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaa |
439 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||| | ||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10877170 |
aatcgaactcaggttctcccaaacgattcgtcctcggtgaagctcattaaccacttgaactcaattgcttggttaa |
10877095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 24532880 - 24532833
Alignment:
| Q |
351 |
tgttccacccaaaaatcgaactcgggttctccctaacatttcgtcttt |
398 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
24532880 |
tgtttcacccaagaatcgaactcgggttctcccgaacaattcgtcttt |
24532833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 50414570 - 50414652
Alignment:
| Q |
348 |
aattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattg |
430 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||| |||||||||||| | |||||| ||||||||| |||||||| |
|
|
| T |
50414570 |
aattgttccacccaggaattgaactcgggttctcctgaacaattcgtctttggtggagctcattgaccacttgatctcaattg |
50414652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 21629915 - 21629819
Alignment:
| Q |
329 |
taaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgt-ctttggtcaaactcattaaccacttgaact |
424 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||| | |||| |||||||||| |||| || |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
21629915 |
taagtatagcttgaccaaaaattgttccacctatgaatcaaactcgggttatcccgaatgtttcgtcctttggtggaactcattaaccacttgaact |
21629819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 441
Target Start/End: Complemental strand, 38021551 - 38021438
Alignment:
| Q |
328 |
ataaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaa |
427 |
Q |
| |
|
||||||||||||||||||| || ||||| ||| | |||||||||| ||||||| | || || |||||| || || |||||||||| |||| ||||| |
|
|
| T |
38021551 |
ataaggatagcctgacaaacaaatgttctacctaggaatcgaactcaggttctctcaaatgatttgtctttcgtaaagttcattaaccatttgagctcaa |
38021452 |
T |
|
| Q |
428 |
ttgcttagttaatt |
441 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
38021451 |
ttgcttggttaatt |
38021438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 442
Target Start/End: Complemental strand, 26172762 - 26172723
Alignment:
| Q |
403 |
aaactcattaaccacttgaactcaattgcttagttaattt |
442 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
26172762 |
aaactcattaaccacttgaactcaattacttggttaattt |
26172723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 12023778 - 12023837
Alignment:
| Q |
336 |
agcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgtc |
395 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
12023778 |
agcctgaccaagaattgttccacccaggaatcgaactcgggtcctcccgaacaattcgtc |
12023837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 14377761 - 14377716
Alignment:
| Q |
327 |
aataaggatagcctgacaaaaaattgttccacccaaaaatcgaact |
372 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||| ||||| |
|
|
| T |
14377761 |
aataaggatagtctgaccaagaattgttccacccaaaaattgaact |
14377716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 24488884 - 24488795
Alignment:
| Q |
348 |
aattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgcttagtt |
437 |
Q |
| |
|
|||||||||| ||| |||| ||||| ||||| | |||| ||| |||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
24488884 |
aattgttccatccataaattaaactcaggttcccatgaacaattcttctttggtgaagttcattaaccacttgaactcaatttcttagtt |
24488795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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