View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_102 (Length: 277)
Name: NF11930_low_102
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_102 |
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| [»] chr4 (5 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 40067318 - 40067449
Alignment:
| Q |
1 |
ctcatatcgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaattcgtgttcgccgtgttctcaatcgctcaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40067318 |
ctcatatcgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaagtcgtgttcgccgtgttctcaatcgctcaag |
40067417 |
T |
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| Q |
101 |
aaaccacggccgccgcagtgttataactagtt |
132 |
Q |
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||||||| |||||||| ||||||||||||||| |
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| T |
40067418 |
aaaccaccgccgccgccgtgttataactagtt |
40067449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 51270727 - 51270602
Alignment:
| Q |
149 |
ttaaactcttaattaaatagtagcacttgagatgacttatttagttgagaactaaaccaaaatttgattcttatcatatggaagaagtataagtatttct |
248 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51270727 |
ttaaactcttaattaaatag---cacttgagatgacttatttagttgagaactaaaccaaaatttgattcttatcatatggaagaagtataattatttct |
51270631 |
T |
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| Q |
249 |
cttttctataaggatggtgcagatatgtt |
277 |
Q |
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| T |
51270630 |
cttttctataaggatggtgcagatatgtt |
51270602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 17560166 - 17560060
Alignment:
| Q |
1 |
ctcatatcgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaattcgtgttcgccgtgttctcaatcgctcaag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
17560166 |
ctcatattgcatttacctatgctatgataattgcagcctgtgtggtcgttttttattcttcttctagaagccgtgtccgccgtgttctcaatcgctcaag |
17560067 |
T |
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| Q |
101 |
aaaccac |
107 |
Q |
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||||||| |
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| T |
17560066 |
aaaccac |
17560060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 51270361 - 51270257
Alignment:
| Q |
1 |
ctcatatcgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaattcgtgttcgccgtgttctcaatcgctcaag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
51270361 |
ctcatattgcatttacctatgctatgataattgcagtctgtgtggtcgttttttgttcttcttctagaagccgtgttcgccatgttctcaatcgctcaag |
51270262 |
T |
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| Q |
101 |
aaacc |
105 |
Q |
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||||| |
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| T |
51270261 |
aaacc |
51270257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 52476794 - 52476688
Alignment:
| Q |
1 |
ctcatatcgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaattcgtgttcgccgtgttctcaatcgctcaag |
100 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
52476794 |
ctcatattgcatttatctatgctatgataattgcagcctgtgtggtcgttttttattcttcttctagaagccgtgtccgccgtgttctcaatcgctcaag |
52476695 |
T |
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| Q |
101 |
aaaccac |
107 |
Q |
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||||||| |
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| T |
52476694 |
aaaccac |
52476688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 24553075 - 24553112
Alignment:
| Q |
31 |
ttgcagcctgtgtggtcgttttttgttcttcttctagaa |
69 |
Q |
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| T |
24553075 |
ttgcagcctgtgtggtcg-tttttgttcttcttctagaa |
24553112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 22774414 - 22774289
Alignment:
| Q |
149 |
ttaaactcttaattaaatagtagcacttgagatgacttatttagttgagaactaaaccaaaatttgattcttatcatatggaagaagtataagtatttct |
248 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22774414 |
ttaaactcttaattaaatag---cacttgagatgacttatttagttgagaactaaaccaaaatttgattcttatcatatggaagaagtagaagtatttct |
22774318 |
T |
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| Q |
249 |
cttttctataaggatggtgcagatatgtt |
277 |
Q |
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| T |
22774317 |
cttttctataaggatggtgcagatatgtt |
22774289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 22774048 - 22773934
Alignment:
| Q |
1 |
ctcatatcgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaattcgtgttcgccgtgttctcaatcgctcaag |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22774048 |
ctcatattgcatttacctatgctatgataattgcagcctgtgtggtcgttttttgttcttcttctagaagccgtgttcgccgtgttctcaatcgctcaag |
22773949 |
T |
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| Q |
101 |
aaaccacggccgccg |
115 |
Q |
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||||||| ||||||| |
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| T |
22773948 |
aaaccaccgccgccg |
22773934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 24767445 - 24767510
Alignment:
| Q |
183 |
acttatttagttgagaactaaaccaaaatttgattcttatcatatggaagaagtataagtatttct |
248 |
Q |
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||||||||||||||||| || |||||||||| | |||||||||| |||| |||||||||||||||| |
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| T |
24767445 |
acttatttagttgagaattataccaaaatttcactcttatcataaggaaaaagtataagtatttct |
24767510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38800025 - 38800058
Alignment:
| Q |
1 |
ctcatatcgcatttacctatgctatgataattgc |
34 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
38800025 |
ctcatattgcatttacctatgctatgataattgc |
38800058 |
T |
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