View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_103 (Length: 276)
Name: NF11930_low_103
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 7681959 - 7682218
Alignment:
| Q |
1 |
atttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgat |
100 |
Q |
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| T |
7681959 |
atttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgat |
7682058 |
T |
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| Q |
101 |
tttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgagg |
200 |
Q |
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| T |
7682059 |
tttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgatg |
7682158 |
T |
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| Q |
201 |
aacataaaacttctatttctaggagtgagaaacataaggatttattgagtactttgttgt |
260 |
Q |
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| T |
7682159 |
aacataaaacttctatttctaggagtgagaaacataaggatttgttgagtactttgttgt |
7682218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 7621733 - 7621477
Alignment:
| Q |
5 |
aatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgatttta |
104 |
Q |
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| T |
7621733 |
aatgatggcaatggtggttgtgaccctaaagctgatgagttcaaggaaatggttcttgaattgatggtgttagctggagttttcaatataagtgatttta |
7621634 |
T |
|
| Q |
105 |
ttccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgaggaaca |
204 |
Q |
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| T |
7621633 |
ttccatcattggaatggctagaccttcaaggagttcaagctaaaatgaagaaattacacaagaagtttgatgcatttttaacgaacattattgatgaacg |
7621534 |
T |
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| Q |
205 |
taaaacttctatttctaggagtgagaaacataaggatttattgagtactttgttgtt |
261 |
Q |
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| T |
7621533 |
tgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgtt |
7621477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 7662457 - 7662713
Alignment:
| Q |
5 |
aatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgatttta |
104 |
Q |
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| T |
7662457 |
aatgatggcaatggtggttgtgaccctaaggctgatgagttcaaggaaatggttcttgaattgatggtgttagctggagttttcaatataagtgatttta |
7662556 |
T |
|
| Q |
105 |
ttccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgaggaaca |
204 |
Q |
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| T |
7662557 |
ttccatcattggaatggctagaccttcaaggagttcaagctaaaatgaaaaaattacacaagaagtttgatgcatttttaacaaacattattgatgaacg |
7662656 |
T |
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| Q |
205 |
taaaacttctatttctaggagtgagaaacataaggatttattgagtactttgttgtt |
261 |
Q |
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| T |
7662657 |
tgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgtt |
7662713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 7667572 - 7667814
Alignment:
| Q |
5 |
aatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgatttta |
104 |
Q |
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| T |
7667572 |
aatgatggcaatggtggttgtgaccctaaagctgatgagttcaaggaaatggttcttgaattgatggtgttagctggagtttttaatataagtgatttta |
7667671 |
T |
|
| Q |
105 |
ttccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgaggaaca |
204 |
Q |
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|||| ||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7667672 |
ttccttcattagaatggctagaccttcaagaagttcaagctaaaatgaaaaaattacacaaacaatttgatgcatttttaacaaacattattgaggaaca |
7667771 |
T |
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| Q |
205 |
taaaacttctatttctaggagtgagaaacataaggatttattg |
247 |
Q |
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| | | |||| || || || ||| |||||||||||||||||| |
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| T |
7667772 |
tgaggcatctaattataagaatgaaaaacataaggatttattg |
7667814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 45480009 - 45480190
Alignment:
| Q |
25 |
tgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgattttattccatcattggaatggcta |
124 |
Q |
| |
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|||||||| |||| ||| |||||| ||||||||| ||| | ||||| || | ||| |||||||| |||||||||||| |||| | || || ||| | |
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| T |
45480009 |
tgatcctagggctgatgagtttaagtctatggttgttgaacttatggtattggctggtgttttcaatattggtgattttcttcctgctttcgagtggttg |
45480108 |
T |
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| Q |
125 |
gaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgaggaacata |
206 |
Q |
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|| |||||||| | |||| ||||||||| ||||||||||| || |||||| |||||||||||| |||||||||||| |||| |
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| T |
45480109 |
gatcttcaaggtgtgcaaggtaaaatgaaaaaattacacaaaagatttgatacatttttaacaagcattattgaggaccata |
45480190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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