View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_104 (Length: 276)

Name: NF11930_low_104
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_104
NF11930_low_104
[»] chr3 (10 HSPs)
chr3 (25-217)||(45004358-45004550)
chr3 (202-262)||(45004002-45004062)
chr3 (87-132)||(22754761-22754806)
chr3 (85-133)||(39926477-39926525)
chr3 (90-135)||(51171086-51171131)
chr3 (92-135)||(16280912-16280955)
chr3 (2-100)||(25227342-25227440)
chr3 (106-135)||(16280575-16280604)
chr3 (92-133)||(44798745-44798786)
chr3 (92-132)||(39926413-39926453)
[»] chr4 (14 HSPs)
chr4 (203-262)||(43634453-43634512)
chr4 (1-173)||(43634294-43634452)
chr4 (85-135)||(46844622-46844672)
chr4 (92-137)||(5314398-5314443)
chr4 (92-141)||(23811319-23811367)
chr4 (92-136)||(23811350-23811394)
chr4 (87-133)||(45682811-45682857)
chr4 (86-141)||(5314359-5314415)
chr4 (4-64)||(32310396-32310456)
chr4 (92-135)||(32304743-32304786)
chr4 (88-138)||(10011622-10011672)
chr4 (88-138)||(10018763-10018813)
chr4 (4-65)||(25146874-25146935)
chr4 (4-45)||(26973307-26973348)
[»] chr2 (8 HSPs)
chr2 (85-134)||(24582535-24582584)
chr2 (92-134)||(24582470-24582512)
chr2 (92-135)||(3816277-3816320)
chr2 (12-79)||(5289776-5289843)
chr2 (10-65)||(28030432-28030487)
chr2 (4-83)||(42882455-42882534)
chr2 (92-141)||(24582495-24582545)
chr2 (3-79)||(41191332-41191408)
[»] chr1 (5 HSPs)
chr1 (85-141)||(32306406-32306462)
chr1 (92-136)||(21258316-21258360)
chr1 (92-137)||(19062888-19062933)
chr1 (92-137)||(32306445-32306490)
chr1 (92-133)||(32713247-32713288)
[»] chr5 (11 HSPs)
chr5 (88-137)||(17066848-17066897)
chr5 (92-135)||(20419551-20419594)
chr5 (68-133)||(3040062-3040127)
chr5 (87-141)||(20419513-20419568)
chr5 (92-132)||(17854694-17854734)
chr5 (88-139)||(2190333-2190384)
chr5 (92-135)||(14410733-14410776)
chr5 (90-137)||(18936713-18936760)
chr5 (92-134)||(25994590-25994632)
chr5 (92-134)||(25994911-25994953)
chr5 (93-134)||(126849-126890)
[»] chr7 (8 HSPs)
chr7 (85-141)||(34328605-34328661)
chr7 (85-147)||(9384639-9384701)
chr7 (92-134)||(23284773-23284815)
chr7 (85-132)||(11561423-11561470)
chr7 (89-131)||(43466745-43466787)
chr7 (92-129)||(34328644-34328681)
chr7 (92-136)||(9384678-9384722)
chr7 (108-136)||(47441665-47441693)
[»] chr6 (10 HSPs)
chr6 (90-136)||(9875774-9875820)
chr6 (4-83)||(5741523-5741602)
chr6 (92-137)||(9863453-9863498)
chr6 (92-141)||(9863519-9863568)
chr6 (4-63)||(4362453-4362512)
chr6 (92-131)||(32879736-32879775)
chr6 (4-62)||(5741178-5741236)
chr6 (85-141)||(9863551-9863607)
chr6 (92-132)||(26622233-26622273)
chr6 (92-132)||(26728211-26728251)
[»] chr8 (2 HSPs)
chr8 (85-131)||(31271851-31271897)
chr8 (92-130)||(13461231-13461269)
[»] scaffold0051 (1 HSPs)
scaffold0051 (4-47)||(21135-21178)
[»] scaffold0012 (1 HSPs)
scaffold0012 (93-131)||(36154-36192)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 45004550 - 45004358
Alignment:
Q  25 acttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgccgcgcaacttaactcacgctgtaattaacacttgcgtgagt 124  Q
    |||||||||||||   ||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  45004550 acttttcgctcgcgctctgcagccttgctcaaaatacccctacgttagttaactaacgccacgcaacttaactcacgttggaattaacacttgcgtgagt 45004451  T
Q  125 taactcacgcaggaatttacaatagaatttccgcggaaatatttttccatttgaattcacgcagtgatttctaattccaaattccagtttctt 217  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  45004450 taactcacgcaggaatttacaatagaatttctgcataaatatttttccatttgaattcacgcagtgattactgattccaaattccagtttctt 45004358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 45004062 - 45004002
Alignment:
Q  202 caaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 262  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  45004062 caaaatccagtttcttattgttatccttttattccaatttagttgcttcctctttattcat 45004002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 22754761 - 22754806
Alignment:
Q  87 gcaacttaactcacgctgtaattaacacttgcgtgagttaactcac 132  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  22754761 gcaacttaactcacgctggaattaacacttgcgtgagttaactcac 22754806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 39926525 - 39926477
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacg 133  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39926525 gcgcaacttaactcacgctggaattaacactttcgtgagttaactcacg 39926477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 51171086 - 51171131
Alignment:
Q  90 acttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  51171086 acttaagtcacgctgaaattaacacgtgcgtgagttaactcacgca 51171131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 16280955 - 16280912
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    ||||||||||| | |||||||||||| |||||||||||||||||    
T  16280955 ttaactcacgccgaaattaacacttgggtgagttaactcacgca 16280912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 25227440 - 25227342
Alignment:
Q  2 tcgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgccgcgcaacttaactcac 100  Q
    |||||||||||||||| ||| | ||||||||||||| |||||||||  | |  |||||| || ||  ||| ||||||||||| ||| ||||||| ||||    
T  25227440 tcgaattctgctcttccccctgcacttttcgctcgcgtcctgcagccatcctaaaaatatccttacgttacttaactaacgcagcgtaacttaagtcac 25227342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 135
Target Start/End: Original strand, 16280575 - 16280604
Alignment:
Q  106 aattaacacttgcgtgagttaactcacgca 135  Q
    ||||||||||||||||||||||||||||||    
T  16280575 aattaacacttgcgtgagttaactcacgca 16280604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 44798786 - 44798745
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacg 133  Q
    |||| |||||||| || |||||||||||||||||||||||||    
T  44798786 ttaattcacgctggaactaacacttgcgtgagttaactcacg 44798745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 39926453 - 39926413
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcac 132  Q
    |||| |||||||| ||||||||||||||||| |||||||||    
T  39926453 ttaattcacgctgaaattaacacttgcgtgaattaactcac 39926413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 43634453 - 43634512
Alignment:
Q  203 aaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43634453 aaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 43634512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43634294 - 43634452
Alignment:
Q  1 ttcgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgccgcgcaacttaactcac 100  Q
    |||||||||| |||||||||| |||||||| ||||||| ||| |||||||| |||||||||| |||             ||| |||||||||||||||||    
T  43634294 ttcgaattctactcttcacccagtactttttgctcgcaccctacagcgttgtccaaaatacctcta-------------acgtcgcgcaacttaactcac 43634380  T
Q  101 gctgtaattaacacttgcgtgagttaactcacgcaggaatttacaatagaatttccgcggaaatatttttcca 173  Q
      |  |||||| |||| | |||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  43634381 cttaaaattaatacttacatgagttaactcacgcaggaatttacaatagaatttctgc-aaaatatttttcca 43634452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 46844672 - 46844622
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  46844672 gcgcaacttaactcacgttgaaattaacacttgcgtgagttaactcacgca 46844622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 5314398 - 5314443
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 137  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  5314398 ttaattcacgctggaattaacacttgcgtgagttaactcacgcagg 5314443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 23811319 - 23811367
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 141  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  23811319 ttaactcacgctgtaattaa-acttgcgtgagttaactcacgctggaatt 23811367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 23811350 - 23811394
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 136  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  23811350 ttaactcacgctggaattaacacttgcgtgagttatctcacgcag 23811394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 45682811 - 45682857
Alignment:
Q  87 gcaacttaactcacgctgtaattaacacttgcgtgagttaactcacg 133  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||    
T  45682811 gcaacttaactcacgttggaattaacacttgcctgagttaactcacg 45682857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 5314359 - 5314415
Alignment:
Q  86 cgcaacttaactcacgctgtaa-ttaacacttgcgtgagttaactcacgcaggaatt 141  Q
    |||||||||||| |||||| || |||||||||||||||||||| |||||| ||||||    
T  5314359 cgcaacttaacttacgctggaaattaacacttgcgtgagttaattcacgctggaatt 5314415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 32310456 - 32310396
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccc 64  Q
    |||||||||||||||||| |||||||||||||||  |||||| |||| || ||| ||||||    
T  32310456 gaattctgctcttcacccagtacttttcgctcgcgccctgcaccgttacctaaattacccc 32310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 32304786 - 32304743
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    ||||||||||||| ||||||||| || |||||||||||||||||    
T  32304786 ttaactcacgctgaaattaacacatgtgtgagttaactcacgca 32304743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 10011672 - 10011622
Alignment:
Q  88 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcagga 138  Q
    |||| ||| |||||||| ||| |||||||||||||||||||||| ||||||    
T  10011672 caacgtaattcacgctgaaatcaacacttgcgtgagttaactcatgcagga 10011622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 10018813 - 10018763
Alignment:
Q  88 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcagga 138  Q
    |||| ||| |||||||| ||| |||||||||||||||||||||| ||||||    
T  10018813 caacgtaattcacgctgaaatcaacacttgcgtgagttaactcatgcagga 10018763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 25146874 - 25146935
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccct 65  Q
    |||| |||||||||||||   |||||||||||||  |||||||||||||| ||| |||||||    
T  25146874 gaatgctgctcttcacccaacacttttcgctcgcgccctgcagcgttgcctaaattacccct 25146935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 26973307 - 26973348
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgca 45  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  26973307 gaattttgctcttcaccctgcacttttcgctcgcatcctgca 26973348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 24582584 - 24582535
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24582584 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgc 24582535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 24582512 - 24582470
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 134  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  24582512 ttaactcacgctggaattaacacttgcgtgagttaagtcacgc 24582470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 3816320 - 3816277
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||    
T  3816320 ttaactcacgttgtaattaacacctgcgtaagttaactcacgca 3816277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 5289776 - 5289843
Alignment:
Q  12 ctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaacta 79  Q
    |||||||||| | || |||||||||||||||||| |  ||||||||||||||||   |||||||||||    
T  5289776 ctcttcacccagcacatttcgctcgcatcctgcaaccatgcccaaaatacccctgcgttagttaacta 5289843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 28030432 - 28030487
Alignment:
Q  10 tgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccct 65  Q
    |||||||||||| | |||||||||||||  |||||||||||||| ||| |||||||    
T  28030432 tgctcttcacccagcacttttcgctcgcgccctgcagcgttgcctaaattacccct 28030487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 42882455 - 42882534
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgc 83  Q
    |||||||||||||||||| | ||||||||||| |  ||||||||  || | ||||||||||||   ||||||||||||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgc 42882534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 24582545 - 24582495
Alignment:
Q  92 ttaactcacgctgt-aattaacacttgcgtgagttaactcacgcaggaatt 141  Q
    |||||||||||||  |||||||||||| |||||||||||||||| ||||||    
T  24582545 ttaactcacgctgggaattaacacttgagtgagttaactcacgctggaatt 24582495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 41191332 - 41191408
Alignment:
Q  3 cgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaacta 79  Q
    ||||||||||||||||||| | |  |||||||||||||||||||   ||| |||||| ||||| |  ||||||||||    
T  41191332 cgaattctgctcttcacccagcaaatttcgctcgcatcctgcagtcatgcgcaaaatgcccctgtgctagttaacta 41191408  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 32306406 - 32306462
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 141  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  32306406 gcgcaacttaactcacgctgaaattaacacttgcgtgagttaactcacgctggaatt 32306462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 21258360 - 21258316
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 136  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  21258360 ttaactcacgctggaattaacacttgcgtgagttaactcacgcag 21258316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 19062933 - 19062888
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 137  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||    
T  19062933 ttaactcacgctgaaattaacacttgcgtgaattaactcatgcagg 19062888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 32306445 - 32306490
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 137  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  32306445 ttaactcacgctggaattgacacttgcatgagttaactcacgcagg 32306490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 32713247 - 32713288
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacg 133  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  32713247 ttaactcacgctaaaattaacacttgcgtgagttaactcacg 32713288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 17066848 - 17066897
Alignment:
Q  88 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 137  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  17066848 caacttaactcacgctggaattaacacttgcatgagttaactcacgcagg 17066897  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 20419551 - 20419594
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  20419551 ttaactcacgctggaattaacacttgcgtgagttaactcacgca 20419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 3040127 - 3040062
Alignment:
Q  68 attagttaactaacgccgcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacg 133  Q
    ||||||||| |||||| |||||||| ||||||||||| ||||||  |||| |||||||||||||||    
T  3040127 attagttaagtaacgctgcgcaactcaactcacgctgaaattaaatcttgtgtgagttaactcacg 3040062  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 20419513 - 20419568
Alignment:
Q  87 gcaacttaactcacgctgtaa-ttaacacttgcgtgagttaactcacgcaggaatt 141  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||| ||||||    
T  20419513 gcaacttaactcacgttggaaattaacacttgcgtgagttaactcacgctggaatt 20419568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 17854734 - 17854694
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcac 132  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  17854734 ttaactcacgctgaaattaacacttgtgtgagttaactcac 17854694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 2190333 - 2190384
Alignment:
Q  88 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaa 139  Q
    ||||||||||||||||| ||||||| |||| || ||||||||||||| ||||    
T  2190333 caacttaactcacgctggaattaacgcttgtgtaagttaactcacgctggaa 2190384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 14410776 - 14410733
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 135  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||    
T  14410776 ttaactcatgctgaaattaacacgtgcgtgagttaactcacgca 14410733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 18936713 - 18936760
Alignment:
Q  90 acttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 137  Q
    |||||| |||||||| |  |||||||||||||||||||||||||||||    
T  18936713 acttaagtcacgctgcatgtaacacttgcgtgagttaactcacgcagg 18936760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 25994590 - 25994632
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 134  Q
    ||||||||||| | ||||||||| |||||||||||||||||||    
T  25994590 ttaactcacgcagaaattaacacctgcgtgagttaactcacgc 25994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 25994953 - 25994911
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 134  Q
    |||||||||||   |||||||||||||||||||||||||||||    
T  25994953 ttaactcacgcgagaattaacacttgcgtgagttaactcacgc 25994911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 126849 - 126890
Alignment:
Q  93 taactcacgctgtaattaacacttgcgtgagttaactcacgc 134  Q
    |||||||||||| ||||||||| |||||||||||| ||||||    
T  126849 taactcacgctggaattaacacctgcgtgagttaagtcacgc 126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 34328605 - 34328661
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 141  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  34328605 gcgcaatttaactcacgttggaattaacacttgcgtgagttaactcacgctggaatt 34328661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 9384639 - 9384701
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatttacaat 147  Q
    |||||||||||||||| ||| ||||||||||||| | ||||||||||||| |||||| |||||    
T  9384639 gcgcaacttaactcacactgaaattaacacttgccttagttaactcacgctggaattaacaat 9384701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 23284815 - 23284773
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 134  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  23284815 ttaactcacgctggaattaacacctgcgtgagttaactcacgc 23284773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 11561470 - 11561423
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcac 132  Q
    ||||||||||||||||| || ||||||||||| | |||||||||||||    
T  11561470 gcgcaacttaactcacgttgaaattaacactttcctgagttaactcac 11561423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 43466745 - 43466787
Alignment:
Q  89 aacttaactcacgctgtaattaacacttgcgtgagttaactca 131  Q
    |||||||||||||||| |||||| ||||| |||||||||||||    
T  43466745 aacttaactcacgctgaaattaatacttgtgtgagttaactca 43466787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 34328644 - 34328681
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaact 129  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  34328644 ttaactcacgctggaattaacacttgtgtgagttaact 34328681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 9384678 - 9384722
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 136  Q
    ||||||||||||| |||||||| || |||||||||||| ||||||    
T  9384678 ttaactcacgctggaattaacaattacgtgagttaacttacgcag 9384722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 47441693 - 47441665
Alignment:
Q  108 ttaacacttgcgtgagttaactcacgcag 136  Q
    |||||||||||||||||||||||||||||    
T  47441693 ttaacacttgcgtgagttaactcacgcag 47441665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 9875774 - 9875820
Alignment:
Q  90 acttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 136  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  9875774 acttaactcacgctggaattaacacttgcctgagttaactcacgcag 9875820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 5741602 - 5741523
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgc 83  Q
    |||||||||||||||||| | |||||||||||||  ||||||||  || ||||||||| |||   |||||||||||||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgc 5741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 9863498 - 9863453
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 137  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||    
T  9863498 ttaactgacgctggaattaacacttgtgtgagttaactcacgcagg 9863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 9863568 - 9863519
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 141  Q
    ||||||||| ||| |||||||||||||||||||||| |||||| ||||||    
T  9863568 ttaactcacactggaattaacacttgcgtgagttaaatcacgctggaatt 9863519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 4362512 - 4362453
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaataccc 63  Q
    ||||||||||||||| || | |||||||||||||  |||||||||||||| ||| |||||    
T  4362512 gaattctgctcttcatccagcacttttcgctcgcgccctgcagcgttgcctaaattaccc 4362453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 32879736 - 32879775
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactca 131  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  32879736 ttaactcacgctgaaattaacacatgcgtgagttaactca 32879775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 5741178 - 5741236
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacc 62  Q
    |||||||||||||||||| | |||||| |||||| |||||||||  || ||||||||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcgtcctgcagccatgaccaaaatacc 5741236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 9863607 - 9863551
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 141  Q
    |||||||||| ||||| ||| ||||||||||||| | ||||||||||| | ||||||    
T  9863607 gcgcaacttacctcacactggaattaacacttgcctaagttaactcacactggaatt 9863551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 26622273 - 26622233
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcac 132  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  26622273 ttaactcgcgctgaaattaacacctgcgtgagttaactcac 26622233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 26728251 - 26728211
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactcac 132  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  26728251 ttaactcgcgctgaaattaacacctgcgtgagttaactcac 26728211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 31271851 - 31271897
Alignment:
Q  85 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactca 131  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||||    
T  31271851 gcgcaacttaactcacgctggaattaagacttgcatgagttaactca 31271897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 13461269 - 13461231
Alignment:
Q  92 ttaactcacgctgtaattaacacttgcgtgagttaactc 130  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  13461269 ttaactcacgctgaaattaacacgtgcgtgagttaactc 13461231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 21178 - 21135
Alignment:
Q  4 gaattctgctcttcacccggtacttttcgctcgcatcctgcagc 47  Q
    |||||||||||||||||| | || ||||||||||||||||||||    
T  21178 gaattctgctcttcacccagcacatttcgctcgcatcctgcagc 21135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 36192 - 36154
Alignment:
Q  93 taactcacgctgtaattaacacttgcgtgagttaactca 131  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  36192 taactcacgctggaattaacacgtgcgtgagttaactca 36154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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