View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_105 (Length: 274)
Name: NF11930_low_105
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_105 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 40807533 - 40807275
Alignment:
| Q |
1 |
tttgcttctttaacgtaaatctgtcaccaatttattatatttatgtgtttctaacttttactttttaatgtgaaaacaacatttattttaacaattnnnn |
100 |
Q |
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| T |
40807533 |
tttgcttctttaacgtaaatctgtcaccaatttattatatttatgtgtttccaacttttactttttaatgtgaaaacaacatttattttaacaattaaaa |
40807434 |
T |
|
| Q |
101 |
nnntggtcatgattatgagggagagttagaaagtatatgaggctgatatcattcaatttagatgtttttaaaataattgtccaaaagatgctagctcagt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40807433 |
aaatggacatgattatgagggagagttagaaagtatatgaggctgatatcattcaatttagatgtttttaaaataattgtccaaaagatgctagctcagt |
40807334 |
T |
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| Q |
201 |
tgtaagagtttagttttataagctcaagaacacaagttcaaatctccacgtacaattgt |
259 |
Q |
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|| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
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| T |
40807333 |
tggaagagtttagttttgtaagttcaaggacacaagttcaaatctccacgtacaattgt |
40807275 |
T |
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