View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_108 (Length: 271)
Name: NF11930_low_108
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_108 |
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| [»] scaffold0854 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold1344 (1 HSPs) |
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Alignment Details
Target: scaffold0854 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 249
Target Start/End: Original strand, 4569 - 4815
Alignment:
| Q |
3 |
aggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
102 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569 |
aggcatgagatttctccatcccttgtcggttccttccaaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
4668 |
T |
|
| Q |
103 |
gtcaaagacacacctcttgatattgtatcttccatcatataaagataatcgcggacatcgttgctgagataatacctttgcaatgttggtaaggttattt |
202 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| |||||||| || || | ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4669 |
ttcaaagacacacatcttgatattgtatctttcatcatataatcataatcgcagaaatagctgctgagatgatacctttgcaatgttggtaaggttattt |
4768 |
T |
|
| Q |
203 |
ccttacaagaatcattgaaactattcaagatgtacaattcttcaagt |
249 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4769 |
ccttacaagaatcaatgaaactattcaagatgtacaattcttcaagt |
4815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 18723517 - 18723764
Alignment:
| Q |
3 |
aggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
102 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18723517 |
aggcatgagatttctccatcccttgtcggttccttccaaatgaagaagctctgttgtttccatcacatacttaaatgttgcttctgagaaataatcccat |
18723616 |
T |
|
| Q |
103 |
gtcaaagacacacctcttgatattgtatcttccatcatataaagataatcgcggacatcgttgctgagataatacctttgcaatgttggtaaggttattt |
202 |
Q |
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|
||||||||||||||||||||||||||||||| |||| ||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
18723617 |
gtcaaagacacacctcttgatattgtatctttcatcttataatgataaacggtgacatcgt---tgagacgatacctttgcaatgttggtaaggttattt |
18723713 |
T |
|
| Q |
203 |
ccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18723714 |
ccttacaagaatcattgaaactattcaagaagtacaattcttcaagtgatg |
18723764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 27370210 - 27369956
Alignment:
| Q |
3 |
aggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
27370210 |
aggcatgagatttctccatcccttgttggttcctttcaaatgaagaacctctgctgtttccatcacatacttaaatgttgcttctgataaataatcccat |
27370111 |
T |
|
| Q |
103 |
gtcaaagacacacctcttgatattgtatcttccatcatataaagataatcgcggacatcgttgctgagataatacctttgcaatgttggtaaggttattt |
202 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| |||| || |||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
27370110 |
tcaaaagacacacctcttgatattgtatatttcatcatataagcataaccggtgacatctt---tgagaaaatacctttgcaatgttggtaaggttattt |
27370014 |
T |
|
| Q |
203 |
ccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatgtccatct |
260 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
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| T |
27370013 |
ccttacaagaatcattgaaactattcatgaagtacaattcttcaagtgatgtgcatct |
27369956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 27343912 - 27343665
Alignment:
| Q |
3 |
aggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27343912 |
aggcatgagatttctccatcccttgtcggttccttccaaatgaagaagctctgctgtttccatcacaaacttcaatgttgcttctgagaaataatcccat |
27343813 |
T |
|
| Q |
103 |
gtcaaagacacacctcttgatattgtatcttccatcatataaagataatcgcggacatcgttgctgagataatacctttgcaatgttggtaaggttattt |
202 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||| ||||| |||||| | |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
27343812 |
ttcaaaaacacacctcttgatattggatctttcatcctataatgataataggagacatc---gctgagacgatacctttgcaatgttggtaaggttattt |
27343716 |
T |
|
| Q |
203 |
ccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||||||||||||||||||| |
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| T |
27343715 |
ccttacaaaaaccattgaaactatccaagaagtacaattcttcaagtgatg |
27343665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 26184008 - 26184087
Alignment:
| Q |
174 |
atacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
|
|||||||| |||| | |||||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
26184008 |
atacctttccaatctaggtaaggttatttctttacaagatttattgaaactcttcaagaagtacaattcttcaagtgatg |
26184087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 26212615 - 26212694
Alignment:
| Q |
174 |
atacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
|
|||||||| |||| | |||||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
26212615 |
atacctttccaatctaggtaaggttatttctttacaagatttattgaaactcttcaagaagtacaattcttcaagtgatg |
26212694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 26145568 - 26145647
Alignment:
| Q |
174 |
atacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||| |
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|
| T |
26145568 |
atacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactatgactgaagtacaattcttcaagtgatg |
26145647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 26239821 - 26239907
Alignment:
| Q |
167 |
tgagataatacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||| |
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|
| T |
26239821 |
tgagaaaatacctttccaatgtaggtaaggttatttccttacaaaactcattgaaactataactaaagtacaattcttcaagtgatg |
26239907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 26117557 - 26117635
Alignment:
| Q |
167 |
tgagataatacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagatgtacaattcttc |
245 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||||||| |||| ||||||||||||| | ||| |||||||||||| |
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|
| T |
26117557 |
tgagaaaatacctttccaatgtaggtaaggttatttcctgacaaaaatcattgaaactgtgacagaagtacaattcttc |
26117635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 18081398 - 18081488
Alignment:
| Q |
4 |
ggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaat |
94 |
Q |
| |
|
||||||||||||||||||||||| || || |||| | ||||||||||| || ||| |||||||| ||| ||||||||||||| ||||| |
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|
| T |
18081398 |
ggcatgagatttctccatcccttcttaactctttccaaccgaagaagctctattttttgcatcacatgcttaaatgttgcttctgtgaaat |
18081488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 18081556 - 18081642
Alignment:
| Q |
174 |
atacctttgcaatgttggtaaggttatttccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatgtccatct |
260 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||| ||| || ||||||| ||| ||||||||||||||||||||| ||||| |
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|
| T |
18081556 |
atacctttccaatgcaggtaaggttatttcctgacaaaaattgttaaaactatgacagaagtacaattcttcaagtgatgtgcatct |
18081642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 26145457 - 26145503
Alignment:
| Q |
51 |
ctctgttgtttccatcacatactttaatgttgcttctgagaaataat |
97 |
Q |
| |
|
||||| ||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
26145457 |
ctctgatgtttgcatcaaatacttaaatgttgcttctgagaaataat |
26145503 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 73341 - 73595
Alignment:
| Q |
3 |
aggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
102 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
73341 |
aggcatgagatttctccatcccttgtcgattccttccaaatgaagaagctctgttgtttccatcaaatacttaaatgttgcttctgagaaataatcccat |
73440 |
T |
|
| Q |
103 |
gtcaaagacacacctcttgatattgtatcttccatcatataaagataatcgcggacatcgttgctgagataatacctttgcaatgttggtaaggttattt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| ||||||| | ||| ||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
73441 |
gtcaaagacacacctcttgatattgtatctttcatcttataagcataatcggtgttatc---gctgagacaatatctttgcaatgttggtaaggttattt |
73537 |
T |
|
| Q |
203 |
ccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatgtccatct |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
73538 |
ccttacaagaatcattgaaactattcaagaagtacaattcttcaagtgatgtgcatct |
73595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 599 - 352
Alignment:
| Q |
3 |
aggcatgagatttctccatcccttgttggttccttccgaatgaagaagctctgttgtttccatcacatactttaatgttgcttctgagaaataatcccat |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||| |||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
599 |
aggcatgagatttctccatcccttgtcggttccttccaaatgaagatgctctgcagttttcatcacatacttcaatgtggcttctgagaaataatcccat |
500 |
T |
|
| Q |
103 |
gtcaaagacacacctcttgatattgtatcttccatcatataaagataatcgcggacatcgttgctgagataatacctttgcaatgttggtaaggttattt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||||| ||||| || |||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
499 |
ctcaaagacacacctcttgatattgtatcattcaccctataacgataaccggcgaca---ttgctgagatgatacctttgcaatgttggtaaggttattt |
403 |
T |
|
| Q |
203 |
ccttacaagaatcattgaaactattcaagatgtacaattcttcaagtgatg |
253 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
402 |
ccttacaaaaatcattgaaactattcaagaagtacaattcttcaagtgatg |
352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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