View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_110 (Length: 271)
Name: NF11930_low_110
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_110 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 32696340 - 32696480
Alignment:
| Q |
126 |
ggatggtggtgtgtcatagtactgcaccatgttctctttttgaggtagctttgtatcaaataaaataaaataaaagagaatagaaatggactatgttgct |
225 |
Q |
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| T |
32696340 |
ggatggtggtgtgtcatagtactacaccatgttctctttttgaggtagctttgtatcaaat-----aaaataaaagagaatagaaatggactatgttgct |
32696434 |
T |
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| Q |
226 |
tgtagatgttgtaatgctaattagagcacagatgttggtgcttcaa |
271 |
Q |
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| T |
32696435 |
tgtagatgttgtaatgctaattagagcacagatgttggtgcttcaa |
32696480 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 32696241 - 32696296
Alignment:
| Q |
27 |
ggttggttggtttaattaagatgagcacaacccagaattaattaactagggtgtga |
82 |
Q |
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| T |
32696241 |
ggttggttggtttaattaagatgagcacaacccagaattaattaactagggtgtga |
32696296 |
T |
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