View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_111 (Length: 270)
Name: NF11930_low_111
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 47773260 - 47773499
Alignment:
| Q |
19 |
ctaacggccaaagctgcatcaggtgactctcgtcgtaagtatgatgcagatagtgtgtatgatcctgcaaattttgcaaccatatacggttatgttttgt |
118 |
Q |
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| T |
47773260 |
ctaacggccaaagctgctttaggtgactcgcgtcgtaagtacgaagcagatagtgtctttgaaactacaagtttcgaaaccatatacggttatgtgcttt |
47773359 |
T |
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| Q |
119 |
gtacacctgatttgtcatcacaacaatgcaccgattgcttgaacacagctatctcagaaatcccaaattgctgtaacgggaagaggggaggaaatgttct |
218 |
Q |
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| T |
47773360 |
gtatgcctgatttgtcatcgcaacaatgcaccgattgcttgaacgcagctatctcagaaatcccaaattgttgtaacgggaagatgggaggaaatgttct |
47773459 |
T |
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| Q |
219 |
taaaccaagttgtcgtcttagatttgatccttatcgcttc |
258 |
Q |
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| T |
47773460 |
taaaccaagttgtcgtcttagatatgatccttatcgcttc |
47773499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 47764882 - 47765098
Alignment:
| Q |
31 |
gctgcatcaggtgactctcgtcgtaagtatgatgcagatagtgtgtatgatcctgcaaattttgcaaccatatacggttatgttttgtgtacacctgatt |
130 |
Q |
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| T |
47764882 |
gctgcatcaggtgactctcgtcgtaagtatgatgcagatagtgtgtatgatgcttcaaattatgcaaccatatacggttatg-----------cctgatt |
47764970 |
T |
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| Q |
131 |
tgtcatcacaacaatgcaccgattgcttgaacacag-ctatctcagaaatcccaaattgctgtaacgggaagaggggaggaaatgttcttaaaccaagtt |
229 |
Q |
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| T |
47764971 |
tgtcatcgcaacaatgcaatgattgcttg-gctcagaccatttcagaaatcccagattgttgtaacgggaagatgggaggaaatattcttaaaccaagtt |
47765069 |
T |
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| Q |
230 |
gtcgtcttagatttgatccttatcgcttc |
258 |
Q |
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| T |
47765070 |
gtcggattagatttgatccttatcgcttc |
47765098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 47761344 - 47761411
Alignment:
| Q |
27 |
caaagctgcatcaggtgactctcgtcgtaagtatgatgcagatagtgtgtatgatcctgcaaattttg |
94 |
Q |
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| T |
47761344 |
caaagctgcatcagttgactctcgcagtaagtatgaagcagataatgagtttgatcctataaattttg |
47761411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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