View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_123 (Length: 251)
Name: NF11930_low_123
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_123 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 29786476 - 29786235
Alignment:
| Q |
10 |
cacagaaccatatacaaatgaaatctttgatttgtttgttttcacagcctggattgaatgagtcaaagcccttggtgccagagattccaaatgaaaaaca |
109 |
Q |
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| T |
29786476 |
cacagaaccatatacaaatgaaatctttgatttgtttgttttcacagcctggattgaatgagtcaaagcccttggtgccagagattccaaatgaaaaaca |
29786377 |
T |
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| Q |
110 |
agatcggcctagtccaatctcagtgttagaatctccatttgaagaatacaatacacctcatgagtccttggaaagcacgaaagatggtcacatgggtaat |
209 |
Q |
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| T |
29786376 |
agatcggcctagtccaatctcagtgttagaatctccatttgaagaatacaatacacctcatgagtccttggaaagcacgaaagatggtcacatgggtaat |
29786277 |
T |
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| Q |
210 |
acctaggccttacttttttctttatcagtgtcttaccattcc |
251 |
Q |
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| T |
29786276 |
acctaggccttacttttttctttatcagtgtcttaccattcc |
29786235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 39874497 - 39874634
Alignment:
| Q |
44 |
tttgttttcacagcctggattgaatgagtcaaagcccttggtgccagagattccaaatgaaaaacaagatcggcctagtccaatctcagtgttagaatct |
143 |
Q |
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| T |
39874497 |
tttgttttcacagcctgaattgaccatgtcaaagcccagggtgccatggatttccagtgaaaaccaggatcagccaagtccaatctcagttttagaacct |
39874596 |
T |
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| Q |
144 |
ccatttgaagaatacaatacacctcatgagtccttgga |
181 |
Q |
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| T |
39874597 |
ccatttgaagatgaaaatgcagctcacgagtccttgga |
39874634 |
T |
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