View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_13 (Length: 705)
Name: NF11930_low_13
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_13 |
 | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold1344 (1 HSPs) |
| | |
|
| [»] scaffold0854 (1 HSPs) |
| |
|
| [»] scaffold0912 (1 HSPs) |
| | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 35)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Original strand, 27369305 - 27369982
Alignment:
| Q |
18 |
gttggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga |
117 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
27369305 |
gttggcctttttgaggatgtttatggtagttacgaagatgctcgaagtcaagcagttgcatcaaaaaagaaactcttagattcatgtttattgttggaga |
27369404 |
T |
|
| Q |
118 |
cagaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtca |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27369405 |
cagagaaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtca |
27369504 |
T |
|
| Q |
218 |
aaagtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27369505 |
aaagtcactggttgaaagcgataagaaaatcaaatatttgatatgtgaaggagatcttagggatttatttgcatttaagtttgatggttctgaacttgag |
27369604 |
T |
|
| Q |
318 |
attctaattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccata |
417 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
27369605 |
attctaattggcaacatgcatatggaggacattttgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttgaatttatcatgccata |
27369704 |
T |
|
| Q |
418 |
gttcttatcgcgaccgtcatccgctatcattaccacaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgatttgggtgacat |
517 |
Q |
| |
|
||||||| | |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
27369705 |
attcttat------catcatcctctatcgttaccacaatcaatgaagccattgtcgaatattcgttctctatcatttgaaagtgttgatttgggtgacat |
27369798 |
T |
|
| Q |
518 |
ttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggagaatttgaga |
617 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27369799 |
ttctggttttggaggcctgcaaagtcttgagactcttgagttgactaaatgtacaattgatgaacttcctcgtgaaattgaaaaactggagaattttaga |
27369898 |
T |
|
| Q |
618 |
ttgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
27369899 |
ttgttggagttgaaaaattgtaaagttagaaataatgacccatttgaagtaatccaaagatgcacatcacttgaagaattgtac |
27369982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 18724437 - 18723745
Alignment:
| Q |
18 |
gttggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18724437 |
gttggcctttttggggatgattatggtagttacaaagatgctcgaactcaagcagctgcatcaaaaaataaactcttagattcatgtttattgttggaga |
18724338 |
T |
|
| Q |
118 |
cagaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtca |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
18724337 |
cagaggaaggatatgtgaaaatgcatgacttggttcgtgaagtagctcaattgatagcaaacaatgagatgaacatagtaaatttttccaacaaaaatca |
18724238 |
T |
|
| Q |
218 |
aaagtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgag |
317 |
Q |
| |
|
|||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
18724237 |
aaagtcacaggttgaaagggataagaatatcaaatatttgatatgcgaaggaaatcttagggatttatttgcatctaagtttgacggttctaaacttgag |
18724138 |
T |
|
| Q |
318 |
attctaattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccata |
417 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18724137 |
tttctaattggcaacatgcatataaaggacattgtgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttgaatttatcacgccata |
18724038 |
T |
|
| Q |
418 |
gttcttatc---------gcgaccgtcatccgctatcattaccacaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgattt |
508 |
Q |
| |
|
| |||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
18724037 |
ctccttatcagtaccatgattaccatcatcgtctatcattaccacaatcaataaagccattgtcgaatatacgttctctatcatttgaaaaatttgattt |
18723938 |
T |
|
| Q |
509 |
gggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggag |
608 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18723937 |
gggtgacatttctgcaattggaggcctgcaaggtcttgagacacttgaattgactcattgtgcaattgatgaacttcctcgtgaaattgaaaaactggag |
18723838 |
T |
|
| Q |
609 |
aatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18723837 |
aattttagattgttggagttgaaaaaatgtaaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
18723745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Original strand, 27343016 - 27343684
Alignment:
| Q |
18 |
gttggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
27343016 |
gttggcctttttggggatgattatggtagttacaaagatgctcgaattcaagcagctacatcaaaaaataaactcctagattgttatttattgttggaga |
27343115 |
T |
|
| Q |
118 |
cagaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtca |
217 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
27343116 |
caaagaaaggagatgtgaaaatgcatgacttggttcgtgaagtagctcaattgataagaaagaatgaggctaagatagtaaa---------caaaagtca |
27343206 |
T |
|
| Q |
218 |
aaagtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27343207 |
aaagtcactggttgaaagcgataagaaaatcaaatatttgatatgcgaaggaaatcttagagatttatttgcaaataagtttgatggttctgaacttgag |
27343306 |
T |
|
| Q |
318 |
attctaattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccata |
417 |
Q |
| |
|
|||||||||||||||||| ||||| || | || |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
27343307 |
attctaattggcgacatggatatgacgggctttttgcagatccccatttcattctttaaaaatattccaaggcttcgtgttttgaatttatcatgccata |
27343406 |
T |
|
| Q |
418 |
gttcttatcgcgaccgtcatccgctatcattaccacaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgatttgggtgacat |
517 |
Q |
| |
|
|||||||| || | ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
27343407 |
attcttatcc------tcgttgtctatcattaccacaatcaatggagccattgtcgaatattcgttctctatcatttgcaaaagttgttttgagtgacat |
27343500 |
T |
|
| Q |
518 |
ttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggagaatttgaga |
617 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
27343501 |
ttctgtttttggaggcctgcaaagtcttgagactcttgagttgactcattgtgaaattgatgaacttcctcatgaaattgaaaaactgaagaattttaga |
27343600 |
T |
|
| Q |
618 |
ttgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
|||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27343601 |
ttgttgaagttggaaaagtgtaaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
27343684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 52 - 701
Target Start/End: Complemental strand, 18082265 - 18081616
Alignment:
| Q |
52 |
aagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacagaggaaggagatgtgaaaatgcatgacttggt |
151 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||| | |||| ||| |||||||||||| |||||| |
|
|
| T |
18082265 |
aagatgctcgaagtcaagcagttgcagcaacaaaaaaactcctagattcaattttattgttggagacaaaaaaaggtgatctgaaaatgcatggcttggt |
18082166 |
T |
|
| Q |
152 |
tcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaagtcactggttgaaagcgataagaaaatgaaa |
251 |
Q |
| |
|
|| | | | ||| |||| ||||||||| || | ||| | | ||||||| |||| ||||||| ||||||||| |||||||||| ||||| || || ||| |
|
|
| T |
18082165 |
tcataatgcagcccaatggatagcaaacaaagctattcaaagagtaaatctttcgaacaaaaaccaaaagtcattggttgaaagggataataatatcaaa |
18082066 |
T |
|
| Q |
252 |
tatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagattctaattggcgacatgcatatggaggacattc |
351 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||| ||||| ||||| |||| ||| ||||||||||||||||| | || || | ||| || | | |
|
|
| T |
18082065 |
tatttgttatgcgaagggaatctaaaggatttattttcatctgagttttatgggtctaaacttgagattctaattctccacgtgaacatgtggggtactg |
18081966 |
T |
|
| Q |
352 |
tgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccatagttcttatcgcgaccgtcatccgctatcattacc |
451 |
Q |
| |
|
|| ||||||||||||||||||| | || |||| || ||||||||||||| ||||||||| | ||| | ||| || || | | ||||||||||| |
|
|
| T |
18081965 |
tggacatccccatttcattcttgggaagtatttcagggcttcgtgttttgaatttatcaaataaaagtattaatctggagcggccaactctatcattacc |
18081866 |
T |
|
| Q |
452 |
acaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgatttgggtgacatttctgtttttggaagcttgcaaagtcttgagact |
551 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||| | ||| || ||| |||||||| |||| ||| |||| |||||| |||||||||| |||||| |
|
|
| T |
18081865 |
acaatcaattagttcattgatgaatattcgttctctattagttgaaagagtctatttgggtaacatctctattttgggaagcctgcaaagtctagagact |
18081766 |
T |
|
| Q |
552 |
cttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggagaatttgagattgttggagttgaaaaattgtgaaattagaaata |
651 |
Q |
| |
|
||||| ||| | ||| |||||| |||||||| |||||||| | |||||| |||| ||||| ||||| | ||| |||| ||||||||||||| || |
|
|
| T |
18081765 |
cttgaattggatcactgtcaaattgatgaacttccatgtgaaattcagaaactgaagaaactgagactgttgaacttggaaaaatgtgaaattagaagta |
18081666 |
T |
|
| Q |
652 |
ataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
| || || |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18081665 |
acaatcctattgaagttatccaaagatgcacatcacttgaagaattgtac |
18081616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 54 - 327
Target Start/End: Complemental strand, 26240514 - 26240241
Alignment:
| Q |
54 |
gatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacagaggaaggagatgtgaaaatgcatgacttggttc |
153 |
Q |
| |
|
|||||||||| ||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| ||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
26240514 |
gatgctcgaagtcaagcaattgtagcaaaaaataaactcctacattcatgtttactgttggaaacaaagaaaggagatgtgaagatgcatgacttggttc |
26240415 |
T |
|
| Q |
154 |
gtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaagtcactggttgaaagcgataagaaaatgaaata |
253 |
Q |
| |
|
|||||||||| || | |||||| ||| | ||||| |||||||||| | | |||| |||||||||| |||||||||| |||||| || ||||| |
|
|
| T |
26240414 |
gtgaagtagcccattggatagcgaaggaaaagattctagtagtaaatttatttgaaaaaaatcaaaagtcattggttgaaaggagtaagaatatcaaata |
26240315 |
T |
|
| Q |
254 |
tttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagattctaattg |
327 |
Q |
| |
|
|||| | | | |||||||||| | |||||||| | | ||| ||||||||| ||| | |||||||||||||||| |
|
|
| T |
26240314 |
tttgttcttccaaggaaatctaatggatttatgttcctcttggtttgatggctctaagcttgagattctaattg |
26240241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 474 - 701
Target Start/End: Complemental strand, 26184295 - 26184068
Alignment:
| Q |
474 |
aatattcgttctctatcatttggaaaagttgatttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaa |
573 |
Q |
| |
|
|||||||||||||||||| ||| ||| || |||||| ||||| |||||||| |||||| |||||||||||||||||||||||||| | ||||| || |
|
|
| T |
26184295 |
aatattcgttctctatcagttgaaaacgtcattttgggcgacatctctgttttgggaagcctgcaaagtcttgagactcttgagttgcattattgtgaaa |
26184196 |
T |
|
| Q |
574 |
ttgaagaacttcctcgtgaaattgaaaaactggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatcca |
673 |
Q |
| |
|
|||| ||| || | |||||||||| ||| || |||| | ||||||||| |||||| | |||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
26184195 |
ttgatgaattttcccgtgaaattgcaaagttgaagaaacttagattgttgtgcttgaaagaatgtgaaattaaaaacaataatccatttgaagttatcca |
26184096 |
T |
|
| Q |
674 |
aagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
26184095 |
gagttgcccatcacttgaagaattgtac |
26184068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 474 - 701
Target Start/End: Complemental strand, 26212902 - 26212675
Alignment:
| Q |
474 |
aatattcgttctctatcatttggaaaagttgatttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaa |
573 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||| ||||| |||||||| |||||| |||||||||||||||||||||| ||| | ||||| || |
|
|
| T |
26212902 |
aatattcgttctctatcagttgaaaaagtcattttgggggacatctctgttttgggaagcctgcaaagtcttgagactcttgaattgcattattgtgaaa |
26212803 |
T |
|
| Q |
574 |
ttgaagaacttcctcgtgaaattgaaaaactggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatcca |
673 |
Q |
| |
|
|||| ||| || | |||||||||| ||| || |||| | ||||||||| |||||| | |||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
26212802 |
ttgatgaattttcccgtgaaattgcaaagttgaagaaacttagattgttgtgcttgaaagaatgtgaaattaaaaacaataatccatttgaagttatcca |
26212703 |
T |
|
| Q |
674 |
aagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
26212702 |
gagttgcccatcacttgaagaattgtac |
26212675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 28493458 - 28493152
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||| ||||||||| | | |
|
|
| T |
28493458 |
ggcctttttggggaagattatgtcagctacgaagatgctcgaattcaagttgttatatccaaaaataaactcctagattcttgtttgttgttggaggccg |
28493359 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaa |
220 |
Q |
| |
|
| || | | |||||||||||||||||||||||||| | ||| |||| |||||| || || |||||| | | ||| || || || | |||| ||||| |
|
|
| T |
28493358 |
atcaaagcggagtgaaaatgcatgacttggttcgtgatgcagcccaatggatagcgaacaaagagattcaaacagtgaagttgtctgataaaaaacaaaa |
28493259 |
T |
|
| Q |
221 |
gtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagatt |
320 |
Q |
| |
|
| || |||||||||| || || || ||||||||| |||| |||||||||||||||||||| ||| | | |||| |||||||||| | ||||||||| |
|
|
| T |
28493258 |
ggcaatggttgaaagggaggcaaatattaaatatttgctatgtgaaggaaatcttaaggatttgttttcctttaagcttgatggttccaagcttgagatt |
28493159 |
T |
|
| Q |
321 |
ctaattg |
327 |
Q |
| |
|
||||||| |
|
|
| T |
28493158 |
ctaattg |
28493152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 54 - 327
Target Start/End: Complemental strand, 26118250 - 26117977
Alignment:
| Q |
54 |
gatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacagaggaaggagatgtgaaaatgcatgacttggttc |
153 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
26118250 |
gatgctcgaagtcaagcaattgcagcaaaaaataaactcctacattcatgtttactgttggaaacaaagaaaggagatgtgaagatgcatgacttggttc |
26118151 |
T |
|
| Q |
154 |
gtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaagtcactggttgaaagcgataagaaaatgaaata |
253 |
Q |
| |
|
| |||||||| || | |||||| || | |||||| ||||||||| | | |||| |||||||||| ||||||| || |||||| || ||||| |
|
|
| T |
26118150 |
gggaagtagcccattggatagctaacgaagagattctagtagtaaattcatttgaaaaaaatcaaaagtcattggttgataggagtaagaatatcaaata |
26118051 |
T |
|
| Q |
254 |
tttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagattctaattg |
327 |
Q |
| |
|
|||| | | | |||||||||| | |||||||| | | ||| ||||||||| ||| | |||||||||||||||| |
|
|
| T |
26118050 |
tttgttcttccaaggaaatctaatggatttatattcctctgggtttgatggctctaagcttgagattctaattg |
26117977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 28473417 - 28473111
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||| ||||||||| | | |
|
|
| T |
28473417 |
ggcctttttggggaagattatgtcagctacgaagatgctcgaattcaagttgttatatccaaaaataaactcctagattcttgtttgttgttggaggccg |
28473318 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaa |
220 |
Q |
| |
|
| || | || |||||||||||||||||||||||||| | ||| |||| |||||| || || |||||| | | ||| || || | || |||| ||||| |
|
|
| T |
28473317 |
atcaaagcgaagtgaaaatgcatgacttggttcgtgatgcagcccaatggatagcgaacaaagagattcaaacagtgaagttgtataataaaaaacaaaa |
28473218 |
T |
|
| Q |
221 |
gtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagatt |
320 |
Q |
| |
|
| || |||||||||| || || || ||||||||| |||| ||||| || ||||||||| | ||| | | |||| |||||||||| | ||||||||| |
|
|
| T |
28473217 |
ggcaatggttgaaagggaggcaaatattaaatatttgttatgtgaaggcaagcttaaggatgtgttttcctttaagattgatggttccaagcttgagatt |
28473118 |
T |
|
| Q |
321 |
ctaattg |
327 |
Q |
| |
|
|||||| |
|
|
| T |
28473117 |
ttaattg |
28473111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 26213316 - 26213196
Alignment:
| Q |
54 |
gatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacagaggaaggagatgtgaaaatgcatgacttggttc |
153 |
Q |
| |
|
|||||||||| ||||| | |||| ||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
26213316 |
gatgctcgaactcaagtaagtgcagcaaaaaataaactcctacgttcatgtctactgttggagacagagaaaggagatgtgaagatgcatgacttggttc |
26213217 |
T |
|
| Q |
154 |
gtgaagtagcacaattgatag |
174 |
Q |
| |
|
| |||||||| |||| ||||| |
|
|
| T |
26213216 |
gggaagtagcccaatggatag |
26213196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 17750425 - 17750119
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||| ||||| | |||||| || |||||| ||||||||| ||||| ||| ||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
17750425 |
ggccttttgggggaagtttatggcagctacgaaaatgctcgaagtcaagttgttatatccaaaaataaactcctagattcttgtttattgttggaggcca |
17750326 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaa |
220 |
Q |
| |
|
| || ||||||||||||||||||||||||||| | ||| |||| |||||| ||||| |||||| | | ||| || || | | |||| |||||| |
|
|
| T |
17750325 |
atcaaaacagtgtgaaaatgcatgacttggttcgtgatgcagcccaatggatagcgaagaaagagattcaaacagtgaagttgtatgataaaaatcaaaa |
17750226 |
T |
|
| Q |
221 |
gtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagatt |
320 |
Q |
| |
|
| || |||||||||| || | ||| || | ||||||| |||| ||||| || ||||||||||| ||| | | |||| |||||||||| | |||||||| |
|
|
| T |
17750225 |
ggcaatggttgaaagggagatgaatattagatatttgttatgtgaaggcaagcttaaggatttgttttcctttaagcttgatggttccaaggttgagatt |
17750126 |
T |
|
| Q |
321 |
ctaattg |
327 |
Q |
| |
|
||||||| |
|
|
| T |
17750125 |
ctaattg |
17750119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 19051745 - 19051439
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||| ||||| | |||||| || |||||| ||||||||| ||||| ||| ||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
19051745 |
ggccttttgggggaagtttatggcagctacgaaaatgctcgaagtcaagttgttatatccaaaaataaactcctagattcttgtttattgttggaggcca |
19051646 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaa |
220 |
Q |
| |
|
| || ||||||||||||||||||||||||||| | ||| |||| |||||| ||||| |||||| | | ||| || || | | |||| |||||| |
|
|
| T |
19051645 |
atcaaaacagtgtgaaaatgcatgacttggttcgtgatgcagcccaatggatagcgaagaaagagattcaaacagtgaagttgtatgataaaaatcaaaa |
19051546 |
T |
|
| Q |
221 |
gtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagatt |
320 |
Q |
| |
|
| || |||||||||| || | ||| || | ||||||| |||| ||||| || ||||||||||| ||| | | |||| |||||||||| | |||||||| |
|
|
| T |
19051545 |
ggcaatggttgaaagggagatgaatattagatatttgttatgtgaaggcaagcttaaggatttgttttcctttaagcttgatggttccaaggttgagatt |
19051446 |
T |
|
| Q |
321 |
ctaattg |
327 |
Q |
| |
|
||||||| |
|
|
| T |
19051445 |
ctaattg |
19051439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 26146248 - 26146114
Alignment:
| Q |
54 |
gatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacagaggaaggagatgtgaaaatgcatgacttggttc |
153 |
Q |
| |
|
|||||||||| ||||||| ||| | | |||||||||||| || |||||||||| ||||||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
26146248 |
gatgctcgaaatcaagcaattgtagccaaaaataaactcttacgttcatgtttactgttggagacagaagatggagatgtgaagatgcatgacttggttc |
26146149 |
T |
|
| Q |
154 |
gtgaagtagcacaattgatagcaaagaatgagatt |
188 |
Q |
| |
|
| |||||||| |||| |||||||| || |||||| |
|
|
| T |
26146148 |
gggaagtagcccaatgtatagcaaacaaagagatt |
26146114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 27908816 - 27909122
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||| ||||||| ||||||| || |||||||||||||||| ||||| || ||| |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
27908816 |
ggccttgttggggaagattatgacagctacgaagatgctcgaagtcaagttattagatccaaaaataaactcctagattcttgtttattgttggagaccg |
27908915 |
T |
|
| Q |
121 |
aggaa-ggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaa |
219 |
Q |
| |
|
| || | ||| |||||||||||||||||||||||||| | ||| |||| |||||| || || |||||| | | | | | || | || |||| ||||| |
|
|
| T |
27908916 |
atcaatgcaga-gtgaaaatgcatgacttggttcgtgatgcagcccaatggatagcgaacaaagagattcaaacaatgaggttgtataataaaaatcaaa |
27909014 |
T |
|
| Q |
220 |
agtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagat |
319 |
Q |
| |
|
|| || |||||||||| || | || || ||||||||| |||| ||||| || | ||||||| | ||| | | |||| |||||||||| | |||||||| |
|
|
| T |
27909015 |
aggcaatggttgaaagggaaaccaatattaaatatttgttatgtgaaggcaagcctaaggatgtgttttcctttaagcttgatggttccaagcttgagat |
27909114 |
T |
|
| Q |
320 |
tctaattg |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
27909115 |
tctaattg |
27909122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 26184707 - 26184589
Alignment:
| Q |
56 |
tgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacagaggaaggagatgtgaaaatgcatgacttggttcgt |
155 |
Q |
| |
|
|||||||| ||||| | |||| ||||||||||||||||| ||||||| || |||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
26184707 |
tgctcgaaatcaagtaagtgcagcaaaaaataaactcctaagttcatgtctactgttggagacagagataggagatgtgaagatgcatgacttggttcgg |
26184608 |
T |
|
| Q |
156 |
gaagtagcacaattgatag |
174 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
26184607 |
gaagtagcccaatggatag |
26184589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 28514436 - 28514130
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||||||||| ||||||| || ||||| |||||||||||||||| ||| ||| |||||||||||||||||||| ||||| ||||||||| | | |
|
|
| T |
28514436 |
ggcctttttggggaagattatgtcagctacgatgatgctcgaattcaagttgttatatccaaaaataaactcctagattcttgtttgttgttggaggccg |
28514337 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaaa |
220 |
Q |
| |
|
| || | | |||||||||||||||||||||||||| | ||| |||| ||||| || || |||||| | | ||| || || | | |||| ||||| |
|
|
| T |
28514336 |
atcaaagcggagtgaaaatgcatgacttggttcgtgatgcagcccaatggatagggaacaaagagattcaaacagtgaagttgtatgataaaaaacaaaa |
28514237 |
T |
|
| Q |
221 |
gtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagatt |
320 |
Q |
| |
|
| | |||||||||| || || || ||||||||| |||| |||||||| ||||||||| | ||| | | |||| |||||||||| | ||||||||| |
|
|
| T |
28514236 |
ggaaatggttgaaagggaggcaaatattaaatatttgctatgtgaaggaaagcttaaggatgtgttttcctttaagcttgatggttccaagcttgagatt |
28514137 |
T |
|
| Q |
321 |
ctaattg |
327 |
Q |
| |
|
||||||| |
|
|
| T |
28514136 |
ctaattg |
28514130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 11407812 - 11408098
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttgga-gaca |
119 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||| ||||| |||||| |||| || |||||||||||||||| ||| ||||| |||||||| | || |
|
|
| T |
11407812 |
ggcctttttggggaagattatttcaggtacgaagatgttcgaaatcaagctgttgtatgcaaaaataaactcctagtttcttgtttgttgttggaggcca |
11407911 |
T |
|
| Q |
120 |
gaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaa |
219 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||| ||||| |||| ||||||| | || |||||| | | ||| || || | | |||| ||||| |
|
|
| T |
11407912 |
atcaaagcaga-gtgaaaatgcatgacttggttcgtgatgtagcccaatggatagcagacaaagagattcaaacagtgaagttgtatgataaaaatcaaa |
11408010 |
T |
|
| Q |
220 |
agtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttc |
307 |
Q |
| |
|
|| || |||||||||| | | ||| || ||||||||| |||| ||||| || ||||||||||| ||| | | |||| |||||||||| |
|
|
| T |
11408011 |
aggcaatggttgaaaggaaaatgaatattaaatatttgttatgtgaaggcaagcttaaggatttgttttcctttaagcttgatggttc |
11408098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 506 - 701
Target Start/End: Complemental strand, 26240083 - 26239888
Alignment:
| Q |
506 |
tttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaactg |
605 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||||||||| |||||||| ||| | ||||| |||| | ||| || | | |||||||| || || |
|
|
| T |
26240083 |
tttgggtgacatctctatttttggaagcctgcaaagtcttgaaactcttgaattggattattgtgaaatttatgaattttcccctgaaattgcaatgttg |
26239984 |
T |
|
| Q |
606 |
gagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
|||| | ||| ||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26239983 |
aagaaacttagactgttgtcattgagagattgtaaaattagaagcaataatccatttgaagttatccagagatgcccatcacttgaagaattgtac |
26239888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 27435852 - 27435757
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggag |
116 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
27435852 |
ggcctttttggggaagattatggaagctacgaagatggtcgaattcaagcagtttacacaaaagaaaaactcctagattcatgtttattgttggag |
27435757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 477 - 701
Target Start/End: Complemental strand, 26117848 - 26117624
Alignment:
| Q |
477 |
attcgttctctatcatttggaaaagttgatttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattg |
576 |
Q |
| |
|
||||||||||||||| ||| ||| ||| |||||||||||| |||||||| |||| | ||||||||||||| ||||||| ||| | |||| ||||| |
|
|
| T |
26117848 |
attcgttctctatcagttgaaaatgtttgtttgggtgacatctctgttttgggaaccctgcaaagtcttgaatctcttgaattgctttattgtaaaattg |
26117749 |
T |
|
| Q |
577 |
aagaacttcctcgtgaaattgaaaaactggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaag |
676 |
Q |
| |
|
| ||| || | | |||||||| || || |||| | ||| ||||||| |||| | |||||| ||||| || ||||| ||||||||||||||||| || |
|
|
| T |
26117748 |
atgaattttcccctgaaattgcaatgttgaagaaacttagactgttggacttgacagattgtggaattataagcaataatccatttgaagttatccagag |
26117649 |
T |
|
| Q |
677 |
atgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
|||||||||| | |||||||||||| |
|
|
| T |
26117648 |
atgcccatcattggaagaattgtac |
26117624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 409
Target Start/End: Original strand, 27772386 - 27772776
Alignment:
| Q |
22 |
gcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga-cag |
120 |
Q |
| |
|
||||||| ||||| |||| || ||| |||||||||||||||| |||| ||||| | | ||||| || |||||| |||| |||||||||||||| | || |
|
|
| T |
27772386 |
gccttttgggggaagattttgatagctacgaagatgctcgaaggcaagtagttgtagcgaaaaacaagctcctacattcttgtttattgttggaaaccaa |
27772485 |
T |
|
| Q |
121 |
aggaagga--gatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaa |
218 |
Q |
| |
|
| ||||| | |||||||||||| |||||||| || || || || ||| ||||||| || || |||||| | ||||||| | || ||||||| ||| |
|
|
| T |
27772486 |
tgaaaggagtgttgtgaaaatgcacgacttggtgcgcgatgtggcccaaatgatagcgaacaaagagattcaagcagtaaatctatcaaacaaaaaacaa |
27772585 |
T |
|
| Q |
219 |
aagtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgaga |
318 |
Q |
| |
|
||||||||| ||||||| || || || || ||||||||| |||| ||| | || || | |||| ||||| | || ||||||||||| ||||||||| |
|
|
| T |
27772586 |
aagtcactgattgaaagagagaaaaatattaaatatttgctatgtgaaagcaagctaatggatgtattttcgggtacaattgatggttctaaacttgaga |
27772685 |
T |
|
| Q |
319 |
ttctaattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatc |
409 |
Q |
| |
|
||||||| | ||| || ||| | ||| | || ||||||| ||||||||||||||||||||| || || |||||||||| ||||||| |
|
|
| T |
27772686 |
ttctaatcgtcgatgtggataaaggtgaccatgtggacatccctatttcattctttgaaaatattgcagggattcgtgttttgcatttatc |
27772776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 28177045 - 28177351
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttgga-gaca |
119 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||| |||| ||| ||| |||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
28177045 |
ggcctttttggggaggattatgtcagctacgaagatgctcgaagccaagttgttatatccaaaaataaactcctagattcttgtttattgttggaggcca |
28177144 |
T |
|
| Q |
120 |
gaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaa |
219 |
Q |
| |
|
| ||| ||| ||| ||||||||||| |||||||||| | ||| |||| |||||| | || |||||| | | | | || || | | |||| ||||| |
|
|
| T |
28177145 |
aaaaaagtaga-gtgcaaatgcatgacatggttcgtgatgcagcccaatggatagcgagcaaagagattcaaacaatgaagttgtatgataaaaatcaaa |
28177243 |
T |
|
| Q |
220 |
agtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagat |
319 |
Q |
| |
|
|| || |||||||||| || || || || ||||||||| |||| ||||| || ||| ||||| | ||| ||| || | |||||||||| | |||||||| |
|
|
| T |
28177244 |
aggcaatggttgaaagggagaaaaatattaaatatttgttatgtgaaggcaagcttgaggatgtgttttcatgtatgcttgatggttccaagcttgagat |
28177343 |
T |
|
| Q |
320 |
tctaattg |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
28177344 |
tctaattg |
28177351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 27465462 - 27465370
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttg |
113 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||| | ||| |||| ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
27465462 |
ggcctttttggcgaaaattatggtagttatgaagatgctcgaactgaagtagttcaatcaacaaataaactcctagattcttgtttattgttg |
27465370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 28046449 - 28046755
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| ||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| ||||||||| | | |
|
|
| T |
28046449 |
ggcctttttggggaagattatgtcagctacgaatatgctcgaactcaagttgttatatccaaaaataaactcctagattcttgtttgttgttggaggccg |
28046548 |
T |
|
| Q |
121 |
a-ggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaa |
219 |
Q |
| |
|
| || ||| |||||||||||||||||||||| ||| | ||| |||| |||||| || || |||||| | | ||| || || | | ||| ||||| |
|
|
| T |
28046549 |
atcaaaacaga-gtgaaaatgcatgacttggttcatgatgcagcccaatggatagcgaacaaagagattcaaacagtgaagttgtatgataaagatcaaa |
28046647 |
T |
|
| Q |
220 |
agtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagat |
319 |
Q |
| |
|
|| || |||||||||| || || || || |||||| |||| ||||| || |||||||| | ||| ||| ||||||||||||||| | |||||||| |
|
|
| T |
28046648 |
aggcaatggttgaaagggagtcaaatattaagtatttgttatgtgaaggcaagattaaggatgtgttttcatttaagtttgatggttccaagcttgagat |
28046747 |
T |
|
| Q |
320 |
tctaattg |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
28046748 |
tctaattg |
28046755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 590 - 700
Target Start/End: Complemental strand, 27401867 - 27401757
Alignment:
| Q |
590 |
tgaaattgaaaaactggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcactt |
689 |
Q |
| |
|
|||||||| |||||||||||| |||| | ||||| |||| ||| ||||||||||||||| |||| |||||||||||||| ||| |||| |||||||| |
|
|
| T |
27401867 |
tgaaattggaaaactggagaacttgaaactgttgaggttggaaacttgtgaaattagaaaggataatccatttgaagttattaaaaaatgctcatcactt |
27401768 |
T |
|
| Q |
690 |
gaagaattgta |
700 |
Q |
| |
|
||||| ||||| |
|
|
| T |
27401767 |
gaagagttgta |
27401757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 640 - 701
Target Start/End: Complemental strand, 26145689 - 26145628
Alignment:
| Q |
640 |
aaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26145689 |
aaattagaagcaataatccatttgaagttatccatagatgcccatcacttgaagaattgtac |
26145628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 27997608 - 27997914
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggagacag |
120 |
Q |
| |
|
|||||||||||||| ||||||| || ||| |||||||||||| ||||| || ||| | ||| |||||||||||||| | |||||| |||||| | | |
|
|
| T |
27997608 |
ggcctttttggggaagattatgtcagctacaaagatgctcgaagtcaagttattatatccataaagaaactcctagattcttatttatttttggaggccg |
27997707 |
T |
|
| Q |
121 |
a-ggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaa |
219 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||||||||| | || |||| |||||| || | |||||| | | ||| || || | | |||| ||||| |
|
|
| T |
27997708 |
atggaagcaga-gtgaaaatgcatgacttggttcgtgatgcggctcaatggatagcgaacacagagattcaaacagtgaagttgtatgataaaaatcaaa |
27997806 |
T |
|
| Q |
220 |
agtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagat |
319 |
Q |
| |
|
|| || |||||||||| ||| ||| || ||||||||| | || |||||||| ||||||||| | ||| | | |||| | | |||||| | |||||||| |
|
|
| T |
27997807 |
aggcaatggttgaaaggaatatgaatattaaatatttgttttgtgaaggaaagcttaaggatgtgttttcctttaagctaggtggttccaagcttgagat |
27997906 |
T |
|
| Q |
320 |
tctaattg |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
27997907 |
tctaattg |
27997914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 27961886 - 27962192
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggag-aca |
119 |
Q |
| |
|
|||||||||||||| ||||| || | | | ||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
27961886 |
ggcctttttggggaagattacggcaactgcaaagatgctcgaattcaaattattatatccaaaaataaactcctagattcttgtttattgttggagtact |
27961985 |
T |
|
| Q |
120 |
gaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtcaaa |
219 |
Q |
| |
|
||| | |||| |||||||||||||| |||||||| | ||| |||| |||||| || || |||||| | | ||| ||||| | | |||| ||||| |
|
|
| T |
27961986 |
atctaagca-atgtcaaaatgcatgacttagttcgtgatgcagcccaatggatagcgaacaaagagattcaaacagtgaatttgtattataaaaatcaaa |
27962084 |
T |
|
| Q |
220 |
agtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagat |
319 |
Q |
| |
|
|| || ||||||||| || || || ||||||||| |||| ||||| || ||||||||||| ||| | | |||| |||||||||| | ||| |||| |
|
|
| T |
27962085 |
aggcaaaggttgaaagggaggcaaatattaaatatttgttatgtgaaggcaagcttaaggatttgttttcctttaagcttgatggttccaagctttagat |
27962184 |
T |
|
| Q |
320 |
tctaattg |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
27962185 |
tctaattg |
27962192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 700
Target Start/End: Original strand, 28143389 - 28143584
Alignment:
| Q |
505 |
atttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaact |
604 |
Q |
| |
|
||||||||||||| ||| |||| |||| | ||||||| |||||||||||||| ||| | |||| |||||| ||| | |||| || ||||| |||||| |
|
|
| T |
28143389 |
atttgggtgacatctctattttgggaaacctgcaaagccttgagactcttgatttggatgattgtaaaattgatgaattgcctcatggaattgcaaaact |
28143488 |
T |
|
| Q |
605 |
ggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgta |
700 |
Q |
| |
|
||||| || |||||||| | ||| ||| |||||||||| || ||||| || |||||||| || || ||||| ||||||||||||| ||||| |
|
|
| T |
28143489 |
agagaaatttcgattgttgaaattggaaagttgtgaaattgcaaggaataatccttttgaagtgattgaaggatgctcatcacttgaagagttgta |
28143584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 28078422 - 28078514
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttg |
113 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||||||||||| | ||| ||| ||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
28078422 |
ggcctttttggggaagattatgtcagctatgaagatgctcgaacttaagttgttatatccaaaaataaactcctagattcttgtttgttgttg |
28078514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 27435633 - 27435546
Alignment:
| Q |
240 |
aagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgagattctaattg |
327 |
Q |
| |
|
||||| || ||||||||| | ||||||||||| | | |||| ||||| ||| ||| |||||||||||| | |||||||||||||||| |
|
|
| T |
27435633 |
aagaacattaaatatttgttttgcgaaggaaagataatggatgtattttcatataattttgatggttctaagcttgagattctaattg |
27435546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 561
Target Start/End: Complemental strand, 28492968 - 28492906
Alignment:
| Q |
499 |
aagttgatttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttga |
561 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||| | | ||||| |||||||||||||| |||| |
|
|
| T |
28492968 |
aagtcgatttgggtgacatctctatttttggaaaccttcaaagccttgagactcttgatttga |
28492906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 480 - 560
Target Start/End: Complemental strand, 26145849 - 26145769
Alignment:
| Q |
480 |
cgttctctatcatttggaaaagttgatttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttg |
560 |
Q |
| |
|
|||||||||| | ||| ||| || ||||||||||||| ||| |||| |||| |||||||||||||||||||||| ||| |
|
|
| T |
26145849 |
cgttctctattaattgaaaatgtcaatttgggtgacatctctattttgggaacactgcaaagtcttgagactcttgaattg |
26145769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 504 - 560
Target Start/End: Complemental strand, 27464967 - 27464911
Alignment:
| Q |
504 |
gatttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttg |
560 |
Q |
| |
|
||||||||||| || ||| |||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
27464967 |
gatttgggtgatatctctattttgggaaatttgcaaagtcttgagacacttgagttg |
27464911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 74246 - 73569
Alignment:
| Q |
18 |
gttggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
74246 |
gttggcctttttggggatgattatggtagttacgaagatgctcgaactcaagcaactgcatcaaaaaataaactcttagattcatgtttattgttggagg |
74147 |
T |
|
| Q |
118 |
cagaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaatgagattaagatagtaaatttttccaacaaaagtca |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
74146 |
cagaggaaggatatgtgaaaatgcatgacttggttcgtgaagtagctcaattgataggaaagaatgagattaagatagtaaatttttccaacaaaagtca |
74047 |
T |
|
| Q |
218 |
aaagtcactggttgaaagcgataagaaaatgaaatatttgatatgcgaaggaaatcttaaggatttatttgcatctaagtttgatggttctgaacttgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
74046 |
aaagtcactggttgaaagcgataagaaaatcaaatatttgatatgcgaaggaaatcttagggatttatttgcaaataagtttgatgtttctgaacttgag |
73947 |
T |
|
| Q |
318 |
attctaattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccata |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||| | || |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
73946 |
attctaattggcgacatgcatatgaagggctttttgcaaatccccatttcattctttaaaaatattccaaggcttcgtgttttgaatttatcaggccata |
73847 |
T |
|
| Q |
418 |
gttcttatcgcgaccgtcatccgctatcattaccacaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgatttgggtgacat |
517 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
73846 |
gttcttat------cctcatcctctatcattaccacaatcaatggagctattgtcgaatattcgttctctatcatttgcacaagttgatttgagtgacat |
73753 |
T |
|
| Q |
518 |
ttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggagaatttgaga |
617 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| || ||||||| ||| |
|
|
| T |
73752 |
ttctgtttttggaggcctgcaaagtcttgagactcttgaattgactcattgtgcaattgatgaacttcctcatgaaattgaaaaattgaagaattttaga |
73653 |
T |
|
| Q |
618 |
ttgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
|||||| |||| |||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
73652 |
ttgttgacgttggaaaagtgttatattagaaataataacccatttgaagttatccaaagatgcacatcacttgaagaattgtac |
73569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 322 - 701
Target Start/End: Original strand, 1 - 371
Alignment:
| Q |
322 |
taattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccatagttc |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |
|
|
| T |
1 |
taattggcgacatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttgaatttatcatgccataattc |
100 |
T |
|
| Q |
422 |
ttatcgcgaccgtcatccgctatcattaccacaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgatttgggtgacatttct |
521 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
101 |
ttatc---------atcctctatcattaccacaatcaatgaagccattgttgaatattcgttctctatcatttggaaatgttgatttgggtgacatttct |
191 |
T |
|
| Q |
522 |
gtttttggaagcttgcaaagtcttgagactcttgagttga-ctagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggagaatttgagattg |
620 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| | |||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
192 |
gtttttggaagcctgcaaagtcttgagactcttgagttgaacta-ttgtgcaattaacgaacttcctcccgaaattgaaaaactggagaattttagattg |
290 |
T |
|
| Q |
621 |
ttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
291 |
ttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtac |
371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 272; Significance: 1e-151; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 331 - 705
Target Start/End: Complemental strand, 5164 - 4796
Alignment:
| Q |
331 |
acatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttaaatttatcacgccatagttcttatcgcga |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| || |
|
|
| T |
5164 |
acatgcatatggaggacattctgcacatccccatttcattctttgaaaatattccaaggcttcgtgttttgaatttatcatgccataattcttat---ga |
5068 |
T |
|
| Q |
431 |
ccgtcatccgctatcattaccacaatcaacgaagccattgtcgaatattcgttctctatcatttggaaaagttgatttgggtgacatttctgtttttgga |
530 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067 |
---tcatcctctatcattaccacaatcaatgaagccattgttgaatattcgttctctatcatttggaaaagttgatttgggtgacatttctgtttttgga |
4971 |
T |
|
| Q |
531 |
agcttgcaaagtcttgagactcttgagttg-actagttgtgcaattgaagaacttcctcgtgaaattgaaaaactggagaatttgagattgttggagttg |
629 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| |||||||||| | |||||||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
4970 |
agcctgcaaagtcttgagactcttgagttgaacta-ttgtgcaattaacgaacttcctcccgaaattgaaaaactagagaattttagattgttggagttg |
4872 |
T |
|
| Q |
630 |
aaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaagaattgtacatct |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4871 |
aaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgccaattacttgaagaattgtacatct |
4796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 157; Significance: 4e-83; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 165 - 1
Alignment:
| Q |
18 |
gttggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
165 |
gttggcctttttggggatgattatggtagttacaatgatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggaga |
66 |
T |
|
| Q |
118 |
cagaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaat |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65 |
cagaggaaggagatgtgaaaatgcatgacttggttcgtgaagtagcacaattgatagcaaagaat |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 8695779 - 8695684
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggag |
116 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||||||| |||| ||| ||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
8695779 |
ggcctttttggggacgattatgccaactacgaagatgctcgaagccaagttgttatatctaaaaataaactccttgattcttgtttattgttggag |
8695684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 9331350 - 9331215
Alignment:
| Q |
22 |
gcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttgga-gacag |
120 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||||| | ||| || ||| ||||||||||| ||||||| ||||||||||| || | || |
|
|
| T |
9331350 |
gcctttttggagaaaattatggtagctacgaagatgctcgaagttaagttgtcatatctaaaaataaacttttagattcttgtttattgttagaggccaa |
9331251 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtga |
157 |
Q |
| |
|
| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
9331250 |
aaaaagtaga-gtgaaaatgcatgacttggttcgtga |
9331215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 9385133 - 9384998
Alignment:
| Q |
22 |
gcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttgga-gacag |
120 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||||| | ||| || ||| ||||||||||| ||||||| ||||||||||| || | || |
|
|
| T |
9385133 |
gcctttttggagaaaattatggtagctacgaagatgctcgaagttaagttgtcatatctaaaaataaacttttagattcttgtttattgttagaggccaa |
9385034 |
T |
|
| Q |
121 |
aggaaggagatgtgaaaatgcatgacttggttcgtga |
157 |
Q |
| |
|
| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
9385033 |
aaaaagtaga-gtgaaaatgcatgacttggttcgtga |
9384998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 693
Target Start/End: Complemental strand, 9330858 - 9330670
Alignment:
| Q |
505 |
atttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaact |
604 |
Q |
| |
|
|||||| |||||| ||| |||| | || | |||||||||||||||||||||| |||| | |||| ||||||| ||| | |||| || ||| |||||| |
|
|
| T |
9330858 |
atttggatgacatctctattttggaaaccctgcaaagtcttgagactcttgatttgaatcattgtacaattgatgaattgcctcatggaatcacaaaact |
9330759 |
T |
|
| Q |
605 |
ggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaag |
693 |
Q |
| |
|
||||| | | ||| ||| | |||||| ||||||||||| || ||||| || |||||||| || || ||||| |||||||||||| |
|
|
| T |
9330758 |
agagaaacttaaattattgaacttgaaagattgtgaaattgcaaggaataatccttttgaagtgattgaaggatgctcatcacttgaag |
9330670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 693
Target Start/End: Complemental strand, 9384641 - 9384453
Alignment:
| Q |
505 |
atttgggtgacatttctgtttttggaagcttgcaaagtcttgagactcttgagttgactagttgtgcaattgaagaacttcctcgtgaaattgaaaaact |
604 |
Q |
| |
|
|||||| |||||| ||| |||| | || | |||||||||||||||||||||| |||| | |||| ||||||| ||| | |||| || ||| |||||| |
|
|
| T |
9384641 |
atttggatgacatctctattttggaaaccctgcaaagtcttgagactcttgatttgaatcattgtacaattgatgaattgcctcatggaatcacaaaact |
9384542 |
T |
|
| Q |
605 |
ggagaatttgagattgttggagttgaaaaattgtgaaattagaaataataacccatttgaagttatccaaagatgcccatcacttgaag |
693 |
Q |
| |
|
||||| | | ||| ||| | |||||| ||||||||||| || ||||| || |||||||| || || ||||| |||||||||||| |
|
|
| T |
9384541 |
agagaaacttaaattattgaacttgaaagattgtgaaattgcaaggaataatccttttgaagtgattgaaggatgctcatcacttgaag |
9384453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 22965 - 23060
Alignment:
| Q |
21 |
ggcctttttggggatgattatggtagttacgaagatgctcgaattcaagcagttgcatcaaaaaataaactcctagattcatgtttattgttggag |
116 |
Q |
| |
|
|||||||||||||| |||||||| || ||| |||||||||||| ||||| |||| ||| ||| | ||||| |||||| ||||||||||||||| |
|
|
| T |
22965 |
ggcctttttggggaagattatggaagctacaaagatgctcgaagtcaagtagttatatccaaacaagtactccgagattcttgtttattgttggag |
23060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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