View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_133 (Length: 240)
Name: NF11930_low_133
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_133 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9401606 - 9401823
Alignment:
| Q |
1 |
ttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9401606 |
ttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtag |
9401705 |
T |
|
| Q |
101 |
aattgtctagctgatgaagattccctattatgggtaggcctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
9401706 |
aattgtctagctgatgaagattccctattatgggtaggcctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttatgaaagaacataag |
9401805 |
T |
|
| Q |
201 |
taatggaaagatcaggca |
218 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
9401806 |
taatggaaaaatcaggca |
9401823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 20075958 - 20076171
Alignment:
| Q |
5 |
ctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
20075958 |
ctgaagaaacaacaattgctggccttaaaccaagtttcatggaaaatattggtccataaatttttgaaagttttgataattgaagatagagaatagaatt |
20076057 |
T |
|
| Q |
105 |
gtctagctgatgaagattccctattatgggtaggcctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaat |
204 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| ||| |||| ||||||||| |||||| | ||||||| |
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|
| T |
20076058 |
atcaagctgatgaagattcccaattatgggtaggcctctaggcccaggtggatgacgtgcattaatgtttctactacgtttcaagaagaagagaagtaat |
20076157 |
T |
|
| Q |
205 |
ggaaagatcaggca |
218 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
20076158 |
ggaaagattaggca |
20076171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 8930607 - 8930809
Alignment:
| Q |
7 |
gaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaattgt |
106 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
8930607 |
gaagaaacaacaatagctgatcttaaacctagttgaagtgaaaatattggtccataaatttttgaaagttttgaaaattgaagataaagaatagaattgt |
8930706 |
T |
|
| Q |
107 |
ctagctgatgaagattccctattatgggtaggcctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaatgg |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| | | |||||||||||||||||||||||| ||||||||| |
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|
| T |
8930707 |
ctagttgatgaagattccctattatgggtaggcctctaggaccaggtgggtgaggttcattgaggcttcttctacgtttctggaagaacagaagtaatgg |
8930806 |
T |
|
| Q |
207 |
aaa |
209 |
Q |
| |
|
||| |
|
|
| T |
8930807 |
aaa |
8930809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 8916765 - 8916978
Alignment:
| Q |
5 |
ctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8916765 |
ctgaagaaacaacaattgctggccttaaaccaagtttcaaggaaaatattggtccataaatttttgaaagttttgataattgaagataaagaatagaatt |
8916864 |
T |
|
| Q |
105 |
gtctagctgatgaagattccctattatgggtaggcctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaat |
204 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| ||| |||| ||||||||| ||||||| | ||||||| |
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|
| T |
8916865 |
gtcaagctgatgaagattcccaattatgggtaggcctctaggcccaggtggatgacgtgcattaatgtttctactacgtttcaggaagaagaaaagtaat |
8916964 |
T |
|
| Q |
205 |
ggaaagatcaggca |
218 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
8916965 |
ggaaaaattaggca |
8916978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 8905921 - 8906125
Alignment:
| Q |
5 |
ctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8905921 |
ctgaagaaacaacaattgctggccttaaaccaagtttcaaggaaaatattggtccataaatttttgaaagatttgataattgaagataaagaatagaatt |
8906020 |
T |
|
| Q |
105 |
gtctagctgatgaagattccctattatgggtaggcctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaat |
204 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| ||| |||| ||||||||| ||||||| | ||||||| |
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|
| T |
8906021 |
gtcaagctgatgaagattcccaattatgggtaggcctctaggcccaggtggatgacgtgcattaatgtttctactacgtttcaggaagaagaaaagtaat |
8906120 |
T |
|
| Q |
205 |
ggaaa |
209 |
Q |
| |
|
||||| |
|
|
| T |
8906121 |
ggaaa |
8906125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 8975518 - 8975372
Alignment:
| Q |
3 |
agctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaa |
102 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||| | || || ||||||||||||||| ||||| |
|
|
| T |
8975518 |
agctgaacaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaa |
8975419 |
T |
|
| Q |
103 |
ttgtctagctgatgaagattccctattatgggtaggcctctaggacc |
149 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||| ||||||| |
|
|
| T |
8975418 |
atgtctagttgatgaagattccctattattggaaggcctttaggacc |
8975372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 8972531 - 8972684
Alignment:
| Q |
3 |
agctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaa |
102 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||| ||||||||||| || ||||||| |||||| | || ||||||||||||||||| ||||| |
|
|
| T |
8972531 |
agctgaagaaacaacaatagcttgtcttaaaccaagtgaaagtgaaaatagaggaccatataattttgagaattgagataattgaagataaagcttagaa |
8972630 |
T |
|
| Q |
103 |
ttgtctagctgatgaagattccctattatgggtaggcctctaggaccaggtgga |
156 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
8972631 |
atatctagttgatgaagatttcctattatgggaaggcctttaggaccaggtgga |
8972684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 8952429 - 8952276
Alignment:
| Q |
3 |
agctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaa |
102 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| ||||||||| | || |||||||| ||||| | || || ||||||| || |||| | || |
|
|
| T |
8952429 |
agctgaagaaacaacaatagctggtcttaaaccaagtttaagtgaaaacaaaggaccatatatctttgagaattgagaaaattgaaaatgaagatttgag |
8952330 |
T |
|
| Q |
103 |
ttgtctagctgatgaagattccctattatgggtaggcctctaggaccaggtgga |
156 |
Q |
| |
|
| ||||| || |||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
8952329 |
atatctagttgtagaagattccctattattggaaggcctttaggaccaggtgga |
8952276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 9027270 - 9027117
Alignment:
| Q |
3 |
agctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaa |
102 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||| |||||||| || |||||||| ||||| | || || | ||||| | |||| ||||| |
|
|
| T |
9027270 |
agctgaagaaacaacaatagcttttcttaatccaagttgaattgaaaatagaggaccatatatctttgagaattgagaaagttgaataggaagattagaa |
9027171 |
T |
|
| Q |
103 |
ttgtctagctgatgaagattccctattatgggtaggcctctaggaccaggtgga |
156 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || ||| |||||||| ||||| |
|
|
| T |
9027170 |
atgtctagttgatgaagatttcctattatgggaagtcctttaggaccaagtgga |
9027117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 9002597 - 9002746
Alignment:
| Q |
7 |
gaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaattgt |
106 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||| |||||||| || |||||| | ||||| | || || | ||||| | |||| ||||| ||| |
|
|
| T |
9002597 |
gaagaaacaacaatagcttttcttaatccaagttgaattgaaaatagaggaccatatgtctttgagaattgagaaagttgaataggaagattagaaatgt |
9002696 |
T |
|
| Q |
107 |
ctagctgatgaagattccctattatgggtaggcctctaggaccaggtgga |
156 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
9002697 |
ctagttgatgaagatttcctattatgggaaggcctttaggaccaagtgga |
9002746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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