View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_135 (Length: 240)
Name: NF11930_low_135
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_135 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 29046833 - 29046611
Alignment:
| Q |
18 |
ggatacatgttcctcacaatgtatgtggctttatattaaccataaacaagtaagtctgtaaaatatattaaatccttacgagtacttcatcttcatatcc |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29046833 |
ggatacatgttcctcaccatgtatgtggctttatattaaccataaacaagtaagtctgtaaaatatattaaatccttacgagtacttcatcttcatatcc |
29046734 |
T |
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| Q |
118 |
agaaaatgcttttgctaactcttgcacactggataataaggctgtttgttcttccttacctcctttaatgcagagcctacataaccatgccgaacccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29046733 |
agaaaatgcttttgctaactcttgcacactggataataaggctgtttgttcttccttacctcctttaatgcagagcctacataaccatgccgaacccaaa |
29046634 |
T |
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| Q |
218 |
gcaaatttttaaggaagttaatc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
29046633 |
gcaaatttttaaggaagttaatc |
29046611 |
T |
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