View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_136 (Length: 234)
Name: NF11930_low_136
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_136 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 8970833 - 8971039
Alignment:
| Q |
13 |
cagagacagttattttagcttttaataataatagtgcggtgccttggacaataagcagcaaatgggacaattgtttagaattagcttttaataatttata |
112 |
Q |
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| T |
8970833 |
cagagacagttattttagcttttaataataatagtgcggtgccttggacaataagcagcaaatgggacaattttttagaattagcttttaataatttata |
8970932 |
T |
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| Q |
113 |
aggtagaaatcctacctccaagaacatccacagaactaactatagcttcatgccctgatagtgtcttcacatgcttaaagtcccggcctgaccaaacctg |
212 |
Q |
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| T |
8970933 |
aggtagaaatcctacctccaagaacatccacagaactaactatagcttcatgccctgatagtgtcttcacatgcttaaagtcccggcctgaccaaacctg |
8971032 |
T |
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| Q |
213 |
gggttaa |
219 |
Q |
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| T |
8971033 |
gggttaa |
8971039 |
T |
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Target: scaffold0012 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 44760 - 44873
Alignment:
| Q |
106 |
atttataaggtagaaatcctacctccaagaacatccacagaactaactatagcttcatgccctgatagtgtcttcacatgcttaaagtcccggcctgacc |
205 |
Q |
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| T |
44760 |
atttataagatagaaatcctacctccaagaacatccagagaagtaactttagcttcatgccctgatagtgtcttcacaggcttaaagtcccggcctgacc |
44859 |
T |
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| Q |
206 |
aaacctggggttaa |
219 |
Q |
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| T |
44860 |
aaacctggagttaa |
44873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 14591695 - 14591582
Alignment:
| Q |
106 |
atttataaggtagaaatcctacctccaagaacatccacagaactaactatagcttcatgccctgatagtgtcttcacatgcttaaagtcccggcctgacc |
205 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
14591695 |
atttataagatagaaatcctacctccaagaacatccagagaagtaactttagcttcatgtccttatagtgtcttcacaggcttaaagtcccggcctgacc |
14591596 |
T |
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| Q |
206 |
aaacctggggttaa |
219 |
Q |
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| T |
14591595 |
aaacctggagttaa |
14591582 |
T |
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