View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_137 (Length: 232)
Name: NF11930_low_137
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_137 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 17560388 - 17560175
Alignment:
| Q |
19 |
gttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatggtgatgatatctgttgca |
118 |
Q |
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| T |
17560388 |
gttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatggtgatgatatctgttgca |
17560289 |
T |
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| Q |
119 |
ttcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattccattgtgaatgtannnnnnnngct |
218 |
Q |
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| T |
17560288 |
ttcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattccattgtgaatgtattttttttgct |
17560189 |
T |
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| Q |
219 |
tataagacctgtgc |
232 |
Q |
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|||||||||||||| |
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| T |
17560188 |
tataagacctgtgc |
17560175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 52477016 - 52476803
Alignment:
| Q |
19 |
gttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatggtgatgatatctgttgca |
118 |
Q |
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| T |
52477016 |
gttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatggtgatgatatctgttgca |
52476917 |
T |
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| Q |
119 |
ttcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattccattgtgaatgtannnnnnnngct |
218 |
Q |
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| T |
52476916 |
ttcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattccattgtgaatgtattttttttgct |
52476817 |
T |
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| Q |
219 |
tataagacctgtgc |
232 |
Q |
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| T |
52476816 |
tataagacctgtgc |
52476803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 51270599 - 51270394
Alignment:
| Q |
2 |
tcattactacttctgctgttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatgg |
101 |
Q |
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| T |
51270599 |
tcattactacttctgtcgttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatgg |
51270500 |
T |
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| Q |
102 |
tgatgatatctgttgcattcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattccattgtg |
201 |
Q |
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| T |
51270499 |
tgatgatatctgttgcattcatgctacaaagtatggagctgaacaatgcattcaacttttagaagttgttttctaattcatttattcaaattgcattgtg |
51270400 |
T |
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| Q |
202 |
aatgta |
207 |
Q |
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|||||| |
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| T |
51270399 |
aatgta |
51270394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 22774286 - 22774081
Alignment:
| Q |
2 |
tcattactacttctgctgttttcataacatgttgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatgg |
101 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22774286 |
tcattactacttctgccgttttcataacatgctgtttgaaaaataaatctttggatgtatggtttatgtaattacaaggttgatcaaatggtgtttatgg |
22774187 |
T |
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| Q |
102 |
tgatgatatctgttgcattcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattccattgtg |
201 |
Q |
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| T |
22774186 |
tgatgatatctgttgcattcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcatttattcaaattgcactgtg |
22774087 |
T |
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| Q |
202 |
aatgta |
207 |
Q |
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|||||| |
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| T |
22774086 |
aatgta |
22774081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 44665474 - 44665398
Alignment:
| Q |
108 |
tatctgttgcattcatgctataaagtatggagctgaacaatgcattcaacttttataagttgttttctaattcattt |
184 |
Q |
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| T |
44665474 |
tatcttttgcattcatgctacatagtagggagctgaacaatgcattcaaatgatagaatttgttttctaatttattt |
44665398 |
T |
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