View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_139 (Length: 226)

Name: NF11930_low_139
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_139
NF11930_low_139
[»] chr3 (1 HSPs)
chr3 (1-210)||(51113422-51113629)
[»] chr4 (4 HSPs)
chr4 (144-207)||(532578-532641)
chr4 (29-93)||(547195-547259)
chr4 (142-186)||(7308310-7308354)
chr4 (37-89)||(10634194-10634246)
[»] chr8 (3 HSPs)
chr8 (7-93)||(17636150-17636236)
chr8 (153-210)||(18314869-18314926)
chr8 (36-88)||(17627817-17627869)
[»] chr2 (1 HSPs)
chr2 (7-86)||(32785535-32785614)
[»] chr1 (5 HSPs)
chr1 (7-91)||(9586896-9586980)
chr1 (156-207)||(9581457-9581508)
chr1 (143-206)||(9587015-9587078)
chr1 (7-101)||(9581328-9581422)
chr1 (37-89)||(7554709-7554761)
[»] chr6 (1 HSPs)
chr6 (150-203)||(6588521-6588574)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 51113629 - 51113422
Alignment:
Q  1 ctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctctacaatcattc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51113629 ctctcatctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctctacaatcattc 51113530  T
Q  101 taacaatacctgtgccggttacaccccattgcagcaaaccctgatggcctcctcgagaagcttacaatttttgaacaagtggaaaaacaattggtagttg 200  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51113529 taacaatacctgtgctggttaca--ccattgcagcaaaccctgatggccacctcgagaagcttagaatttttgaacaagtggaaaaacaattggtagttg 51113432  T
Q  201 atgtagtaat 210  Q
    ||||||||||    
T  51113431 atgtagtaat 51113422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 532578 - 532641
Alignment:
Q  144 atggcctcctcgagaagcttacaatttttgaacaagtggaaaaacaattggtagttgatgtagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  532578 atggcctcctcgagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagt 532641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 547195 - 547259
Alignment:
Q  29 ccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctctaca 93  Q
    |||| ||||||||||| ||||| || |||||||||||| || | |||||||||||||||||||||    
T  547195 ccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctaca 547259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 7308310 - 7308354
Alignment:
Q  142 tgatggcctcctcgagaagcttacaatttttgaacaagtggaaaa 186  Q
    |||||||||| || |||||||||||||| || |||||||||||||    
T  7308310 tgatggcctcttccagaagcttacaattcttaaacaagtggaaaa 7308354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 10634246 - 10634194
Alignment:
Q  37 agagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctc 89  Q
    |||||||| | ||| |||||| |||||||| || |||||||||||||||||||    
T  10634246 agagacttaagttgaggtcttccaacaaaatccctcaaagaattagaattctc 10634194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 17636236 - 17636150
Alignment:
Q  7 tctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctctaca 93  Q
    ||||||||||||| ||||| |  ||| ||||||||||| ||||| ||  |||||||||||  |||| ||||||||||||||||||||    
T  17636236 tctcttaaccatgaattgtaaggcaaatggagagacttaaattgagggtttacaacaaaattcatcgaagaattagaattctctaca 17636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 18314926 - 18314869
Alignment:
Q  153 tcgagaagcttacaatttttgaacaagtggaaaaacaattggtagttgatgtagtaat 210  Q
    |||||||||||||| || |||||||||||||||| | |||| | ||||||||||||||    
T  18314926 tcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaat 18314869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 17627869 - 17627817
Alignment:
Q  36 gagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattct 88  Q
    |||||| |||||||| || |||||||| ||| ||| |||||||||||||||||    
T  17627869 gagagattttaattgagggcttacaacgaaatccaccaaagaattagaattct 17627817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 32785614 - 32785535
Alignment:
Q  7 tctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaatt 86  Q
    |||||||||||   |||| || |||| |||||| |||||||||| ||  ||||||||||| |||||||||||||||||||    
T  32785614 tctcttaaccaataattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattagaatt 32785535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 9586896 - 9586980
Alignment:
Q  7 tctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctcta 91  Q
    |||||||||||| ||||| || |||| |  |||||||| ||||| ||||||||||||| | || ||||| | |||||||||||||    
T  9586896 tctcttaaccattgattgcgacccaaatcaagagacttcaattgaggtcttacaacaatatccttcaaaaatttagaattctcta 9586980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 9581457 - 9581508
Alignment:
Q  156 agaagcttacaatttttgaacaagtggaaaaacaattggtagttgatgtagt 207  Q
    ||||| ||||||||||||||||||||||||| ||| |||| ||||| |||||    
T  9581457 agaagattacaatttttgaacaagtggaaaagcaaatggttgttgaggtagt 9581508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 9587015 - 9587078
Alignment:
Q  143 gatggcctcctcgagaagcttacaatttttgaacaagtggaaaaacaattggtagttgatgtag 206  Q
    ||||| ||| || ||||| ||||||||||||||||||||||||| | |||||| ||||| ||||    
T  9587015 gatggtctcttcaagaagattacaatttttgaacaagtggaaaagcgattggttgttgaggtag 9587078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 9581328 - 9581422
Alignment:
Q  7 tctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctctacaatcattct 101  Q
    |||||||| ||| |||||||| |||| |  |||||||||||||| || |||||| ||| | || | ||||| ||||||||||| ||| |||||||    
T  9581328 tctcttaaacattgattgtgacccaaatcaagagactttaattgagggcttacaccaatatccttgaaagacttagaattctcgacactcattct 9581422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 7554709 - 7554761
Alignment:
Q  37 agagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctc 89  Q
    ||||||||||| |  || |||||||||||| |||||||||||| |||||||||    
T  7554709 agagactttaagttggggcttacaacaaaatccatcaaagaataagaattctc 7554761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 6588574 - 6588521
Alignment:
Q  150 tcctcgagaagcttacaatttttgaacaagtggaaaaacaattggtagttgatg 203  Q
    |||| ||||||||||||||| |||||||||||||||| | |||| | |||||||    
T  6588574 tcctggagaagcttacaattgttgaacaagtggaaaagcgattgattgttgatg 6588521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University