View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_14 (Length: 698)

Name: NF11930_low_14
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_14
NF11930_low_14
[»] chr3 (3 HSPs)
chr3 (15-678)||(45382702-45383374)
chr3 (337-426)||(50084778-50084869)
chr3 (595-641)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (590-670)||(27661703-27661783)
chr6 (590-627)||(26650237-26650274)
chr6 (590-627)||(26756205-26756242)
chr6 (586-626)||(12627824-12627864)
chr6 (590-630)||(29449688-29449728)
chr6 (515-565)||(8148268-8148318)
chr6 (518-571)||(20809178-20809231)
chr6 (590-619)||(28783014-28783043)
chr6 (572-629)||(34057962-34058019)
chr6 (516-552)||(29670971-29671007)
chr6 (593-629)||(30537508-30537544)
chr6 (518-566)||(31811989-31812037)
[»] chr1 (5 HSPs)
chr1 (322-420)||(31686728-31686828)
chr1 (272-425)||(25101927-25102080)
chr1 (581-626)||(264615-264660)
chr1 (530-570)||(27835482-27835522)
chr1 (590-626)||(43609830-43609866)
[»] chr5 (7 HSPs)
chr5 (365-419)||(27803033-27803089)
chr5 (590-629)||(28136673-28136712)
chr5 (322-426)||(41978263-41978369)
chr5 (322-390)||(16265448-16265516)
chr5 (590-627)||(645342-645379)
chr5 (581-626)||(11601688-11601733)
chr5 (518-566)||(12478334-12478382)
[»] chr7 (4 HSPs)
chr7 (590-630)||(43160491-43160531)
chr7 (581-628)||(10893872-10893919)
chr7 (590-632)||(650524-650566)
chr7 (590-626)||(18750887-18750923)
[»] chr8 (7 HSPs)
chr8 (523-565)||(14229600-14229642)
chr8 (590-630)||(32691750-32691790)
chr8 (363-416)||(40688136-40688191)
chr8 (581-629)||(41686804-41686852)
chr8 (363-426)||(31344424-31344487)
chr8 (338-416)||(7620090-7620172)
chr8 (581-629)||(31681833-31681881)
[»] chr2 (2 HSPs)
chr2 (536-632)||(9956949-9957045)
chr2 (339-426)||(9151330-9151417)
[»] chr4 (4 HSPs)
chr4 (590-640)||(10164460-10164510)
chr4 (590-628)||(28890768-28890806)
chr4 (586-622)||(29388374-29388410)
chr4 (590-630)||(45615427-45615467)


Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 15 - 678
Target Start/End: Complemental strand, 45383374 - 45382702
Alignment:
Q  15 tcaaaaactgacttgagcgtttagtgtttgcatatacaacacccctgccaaagagctcagccatcgtcctcagttgcgtttcatcaaccgaccatccatc 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45383374 tcaaaaactgacttgagcgtt-agtgtttgcatatacaacacccctgccaaagagctcagccatcgtcctcagttgcgtttcatcaaccgaccatcgatc 45383276  T
Q  115 tcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaagggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383275 tcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaagggt 45383176  T
Q  215 ctatttacttcgtaaacacattttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaagaa 314  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383175 ctatttacttcgtaaacacgttttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaagaa 45383076  T
Q  315 atgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaa 414  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45383075 ataacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattattcacttcaagagtcttttctcattgttaacaagtaaaagtaa 45382976  T
Q  415 cac-aaaatttagnnnnnnnnnnnntaagccgtaattctgtatgacaattaagtttcatagaagtggagaaagcaaaggaagtgactaattggtaaataa 513  Q
    ||| |||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45382975 cacaaaaatttagaaaaataaaaaataagccgtaattctgtatgacaa-taagtttcatagaagtggagaaagcaaaggaattgactaattggtaaataa 45382877  T
Q  514 tgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtc-----------tgtcaccaacatatgtgattacatt 602  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||           ||||||| |||||||||||||||||    
T  45382876 tgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacatt 45382778  T
Q  603 caaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctct 678  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  45382777 caaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 50084869 - 50084778
Alignment:
Q  337 acattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaaatttag 426  Q
    |||||||||||||||| | || | |||  ||||||||||| ||||||||||  |||||| |||||||||||||||| ||| ||||| |||||    
T  50084869 acattttcattgtttctggaaattcaaggcaattgttcacatcaagagtctcctttctccttgttaacaagtaaaattaatacaaattttag 50084778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 641
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  595 attacattcaaatatgttattttcttaaattactactgatgttgacg 641  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 590 - 670
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 670  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 590 - 627
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattac 627  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 590 - 627
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattac 627  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 626
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  586 acatatgtgattacattcaaatatgttattttcttaaatta 626  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactac 630  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  515 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 565  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  518 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 571  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 619
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  590 atgtgattacattcaaatatgttattttct 619  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  572 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 629  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  516 aactttgtagcacagacatttctgatcgaaggcatgt 552  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 629
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  593 tgattacattcaaatatgttattttcttaaattacta 629  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 566
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  518 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 566  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 322 - 420
Target Start/End: Complemental strand, 31686828 - 31686728
Alignment:
Q  322 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 419  Q
    ||||||| || ||| |||||||||||||||  | || | ||| ||||| |||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  31686828 aaaatagttcttttgacattttcattgttttaggaaatgcaagacaatcgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 31686729  T
Q  420 a 420  Q
    |    
T  31686728 a 31686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 25102080 - 25101927
Alignment:
Q  272 gagagaagattaaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattg 371  Q
    |||||||||| |||||||| ||||||| ||  || |||| ||||  |  ||||||||||||||   |||||||||| |||||  || ||||| |||| ||    
T  25102080 gagagaagataaaatgctagctagggacgatgcacttca-gaaaaaaataaaaatagctcattaggcattttcattatttccagaaatacaagacaaatg 25101982  T
Q  372 ttcacttcaagagtct-tttctcattgttaacaagtaaaagtaacacaaaattta 425  Q
    ||| || ||||||||| |||||| ||||||| |||||||| | ||||||| ||||    
T  25101981 ttccctccaagagtctctttctccttgttaagaagtaaaacttacacaaatttta 25101927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 626
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  581 caccaacatatgtgattacattcaaatatgttattttcttaaatta 626  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 530 - 570
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  530 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 570  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 626
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaatta 626  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 27803033 - 27803089
Alignment:
Q  365 acaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 419  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  27803033 acaattgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 27803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 590 - 629
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattacta 629  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 322 - 426
Target Start/End: Original strand, 41978263 - 41978369
Alignment:
Q  322 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagag--tcttttctcattgttaacaagtaaaagtaacacaa 419  Q
    ||||||| || ||| |||||||||||||||||| || | ||| |||||| |||||||||||||  |||| |||  ||| ||||||||||||  |||||||    
T  41978263 aaaatagttcttttgacattttcattgtttccggaaatgcaaaacaattcttcacttcaagagcctcttatcttcttgctaacaagtaaaaacaacacaa 41978362  T
Q  420 aatttag 426  Q
    | |||||    
T  41978363 attttag 41978369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 16265448 - 16265516
Alignment:
Q  322 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtctttt 390  Q
    |||||||||  ||| |||||||||||||||| | || | ||| |||| |||||||||||||||||||||    
T  16265448 aaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctttt 16265516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 627
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattac 627  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 626
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  581 caccaacatatgtgattacattcaaatatgttattttcttaaatta 626  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 566
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  518 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 566  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactac 630  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 628
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  581 caccaacatatgtgattacattcaaatatgttattttcttaaattact 628  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 632
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactactg 632  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 626
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaatta 626  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  523 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 565  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactac 630  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 40688191 - 40688136
Alignment:
Q  363 acacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaaca 416  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  40688191 acacaattgttcacttcaagagtctagtatctcattgttaccaagtaaaattaaca 40688136  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 629
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  581 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 629  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 31344424 - 31344487
Alignment:
Q  363 acacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 426  Q
    |||||| ||||||||||||||||||| |||| |||| |  |||||||| ||||||||| |||||    
T  31344424 acacaagtgttcacttcaagagtcttatctctttgtcaggaagtaaaattaacacaaactttag 31344487  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 7620090 - 7620172
Alignment:
Q  338 cattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct----tttctcattgttaacaagtaaaagtaaca 416  Q
    |||||||||| |||  |||| | ||| ||||||||| |||||||||||||    |||||| |||||||||||||||| |||||    
T  7620090 cattttcattatttttgaaaatgcaagacaattgttaacttcaagagtctctcttttctccttgttaacaagtaaaactaaca 7620172  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 629
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  581 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 629  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 632
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  536 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 632  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 9151330 - 9151417
Alignment:
Q  339 attttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 426  Q
    |||||||| ||||||  || | ||| ||||||||||||||||||||||||||||| || ||| || |||  | ||||||||| |||||    
T  9151330 attttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttctctttattaccatgtaggaataacacaaattttag 9151417  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 640
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 640  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 628
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattact 628  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 586 - 622
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  586 acatatgtgattacattcaaatatgttattttcttaa 622  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  590 atgtgattacattcaaatatgttattttcttaaattactac 630  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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