View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_144 (Length: 221)
Name: NF11930_low_144
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_144 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24261810 - 24261590
Alignment:
| Q |
1 |
tataacattggataaagggttttattaaaactgttttcatttcaacatgatgagcacccaataaaaggcagtgaaaataaacgtaaaagtatttcaatct |
100 |
Q |
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| T |
24261810 |
tataacattggataaagggttttattaaaactgttttcatttcaacaagatgagcacccaataaaaggcagtgaaaataaacgtaaaagtatttcaatct |
24261711 |
T |
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| Q |
101 |
attaaaaaacattcaatcgattctaaaacaacacaattgagtgtatgatacataattgtcaatgtgtacgatgaagctacaaaattgctctatcagctca |
200 |
Q |
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| T |
24261710 |
attaaaaaacattcaatcgattctaaaacaacacaattgagtgtatgatacataattgtcaatgtgtacgatgaagctacaaaattgctctatcagctta |
24261611 |
T |
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| Q |
201 |
tatatataaaagcacacgttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
24261610 |
tatatataaaagcacacgttt |
24261590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 14227196 - 14227321
Alignment:
| Q |
1 |
tataacattggataaagggttttattaa-----aactgttttcatttcaacatgatgagcacccaataaaaggcagtgaaaataaacgtaaaagtatttc |
95 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
14227196 |
tataacacgggataaagggttttattaatttaaaactgttttcagttcaacatgatcagcatccaacaaaaggcagtgaaaataaacgtaaaagtatttc |
14227295 |
T |
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| Q |
96 |
aatctattaaaaaacattcaatcgat |
121 |
Q |
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| T |
14227296 |
aatccattaaaagacgttccatcgat |
14227321 |
T |
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