View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_145 (Length: 219)
Name: NF11930_low_145
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_145 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 3019207 - 3019073
Alignment:
| Q |
70 |
atatgtatgagagaaaaccggttggagagagattgaataaagtgatgaagaaatgatgcatcatttcccgttaagagaagatcatcaacataaaccaaaa |
169 |
Q |
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| T |
3019207 |
atatgtttgagagaaaaccggttggagagagattgaataaagtgatgaagaaatgatgcatcatttcccgttaaaagaagatcatcaacataaaccaaaa |
3019108 |
T |
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| Q |
170 |
agtatgcaagagtagtacctgaggcatatatgaag |
204 |
Q |
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| T |
3019107 |
agtatgcaagagtagtacctgaggcatatatgaag |
3019073 |
T |
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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 2662140 - 2662067
Alignment:
| Q |
70 |
atatgtatgagagaaaaccggttggagagagattgaataaagtgatgaagaaatgatgcatcatttcccgttaa |
143 |
Q |
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| T |
2662140 |
atatgtttgagagaaaaccggttggagaaagattgaataaagtgatgaagaaatgatgcatcatttcccgttaa |
2662067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29232335 - 29232399
Alignment:
| Q |
12 |
gcagagaggtagatgaaatgaaattctatgattgatgggaaagtaggttgggttgtatatatgta |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29232335 |
gcagagaggtagatgaaatgaaattctatgattgatgggaaagtaggttgggttgtatatatgta |
29232399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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