View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_148 (Length: 211)
Name: NF11930_low_148
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_148 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 31495947 - 31496126
Alignment:
| Q |
20 |
tcagtatcagtagcatgatgttatttttgaaaaaatggaaactttcaaagagattcttgctgagagctcatttgggtgttcttgttttgttgctcacatc |
119 |
Q |
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| T |
31495947 |
tcagtatcagtagcatgatgttatttttgaaaaaatggaaactttcaaagagattcttgctgagagctcatttgggtgttcttgttttgttgctcacatc |
31496046 |
T |
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| Q |
120 |
tttgtactcttttgtctccgataaagcttcgaacgaaaaaccagacctattgagcatgatttcttgtgttgcctttgctt |
199 |
Q |
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| T |
31496047 |
tttgtactcttttgtctccgataaagcttcgaacgaaaaaccagacctattgagcatgatttcttgtgttgcctttgctt |
31496126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 40844410 - 40844535
Alignment:
| Q |
20 |
tcagtatcagtagcatgatgttatttttgaaaaaatggaaactttcaaagagattcttgctgagagctcatttgggtgttcttgttttgttgctcacatc |
119 |
Q |
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| T |
40844410 |
tcagtattagtagcatgatgttatttttgaagaaatggaaactttcaaggagattcttactgaaagctcatttgggtgttcttgttttgttgctaacatc |
40844509 |
T |
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| Q |
120 |
tttgtactcttttgtctccgataaag |
145 |
Q |
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| T |
40844510 |
tttatactcttttgtatctgataaag |
40844535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 31461398 - 31461456
Alignment:
| Q |
20 |
tcagtatcagtagcatgatgttatttttgaa-aaaatggaaactttcaaagagattctt |
77 |
Q |
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| T |
31461398 |
tcagtatcagtcgcatgatgttacttttgaataaaagggaaactttcaaggagattctt |
31461456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 140272 - 140185
Alignment:
| Q |
96 |
tgttcttgttttgttgctcacatctttgtactcttttgtctccgataaagcttcgaacgaaaa-accagacctattgagcatgatttct |
183 |
Q |
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| T |
140272 |
tgttcttgttttgttgctaacatc-ttgtactcttttgtatctaataaagctttgaactaaaacaccagacctcttgagtctgatttct |
140185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 148293 - 148206
Alignment:
| Q |
96 |
tgttcttgttttgttgctcacatctttgtactcttttgtctccgataaagcttcgaacgaaaa-accagacctattgagcatgatttct |
183 |
Q |
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| T |
148293 |
tgttcttgttttgttgctaacatc-ttgtactcttttgtatctaataaagctttgaactaaaacaccagacctcttgagtctgatttct |
148206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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