View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_15 (Length: 696)
Name: NF11930_low_15
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 39 - 686
Target Start/End: Complemental strand, 1581342 - 1580676
Alignment:
| Q |
39 |
gaaagaaaggg--ctaggcccgagaaaagataaaactaaacagagatgactctaggggctatcccacataacatcaactaacatcagagaactaaaccca |
136 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
1581342 |
gaaagaaaggggcctaggcccgagaaaagataaaactaaacagagatgactctaggggctatcccacataacatcaactaaca--------ctaagccca |
1581251 |
T |
|
| Q |
137 |
gttggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaa |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581250 |
gttggacattgctcatacacacgcaacccaggcacatgctcacaacccatgtttgcaagagcgtctgcttacgaattcgcctcacgataagaatgacaaa |
1581151 |
T |
|
| Q |
237 |
tcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccac |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1581150 |
tcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgcaccac |
1581051 |
T |
|
| Q |
337 |
cacacttgaa---------------------gcaaaacctctctct--agcaatttggagaccatcaaagactccctaaagctctgctaaatatgcatta |
413 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581050 |
cacacttgaatcaacgtgcaactcaacctttgcaaaacctctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcatta |
1580951 |
T |
|
| Q |
414 |
catctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccat |
511 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
1580950 |
catctacccaagctacgggaaaagccactaatccactttccttcagcgtttcgaaaaagctctccattaccaactgagttatctcttttactagccccat |
1580851 |
T |
|
| Q |
512 |
ctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttg |
611 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1580850 |
ctgtattcaaccaaatccaatcgtcctccggtttcttctacataacatcaatttccactcgatgcttagtatgcccactcacaacactattatccgcttg |
1580751 |
T |
|
| Q |
612 |
cttatattgctgcacccaacccataatatgtcaagggtggctggagcgaattcgaacctcaccatgcacttctct |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1580750 |
cttatattgctgcacccaacccataatatgccaagggtggctggagcgaattcgagcctcaccatgcacttctct |
1580676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 106 - 490
Target Start/End: Original strand, 3663627 - 3664028
Alignment:
| Q |
106 |
aacatcaactaacatcagagaactaaacccagtt--ggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctg |
203 |
Q |
| |
|
|||||||||||||||||||||||| || | | | ||||| ||| ||||||||| ||| ||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
3663627 |
aacatcaactaacatcagagaacttaaactatatctggacactgctcatacacacacaaatcaggcgcatgctcacaatccatgtttgcaagagcgtctg |
3663726 |
T |
|
| Q |
204 |
cttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacact |
303 |
Q |
| |
|
| || |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3663727 |
cacacaaatttgcctcacgaaaagaatgacaaattttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacact |
3663826 |
T |
|
| Q |
304 |
tccatccttagttgtctgtagggtatgtaccaccac-----acttgaa-----------gcaaaacctctctctagcaatttggagaccatcaaagactc |
387 |
Q |
| |
|
|||||| |||||||| || ||||| |||||| ||| || || | |||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
3663827 |
tccatctttagttgtttgcagggtccgtaccatcacaatcaacgtgcaattcaaccctcgcaaaacctctctctatcaatttggagaccatcaaaggctc |
3663926 |
T |
|
| Q |
388 |
cctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagc |
487 |
Q |
| |
|
|| |||||||| || |||| ||||||| |||||| ||| || |||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
3663927 |
cccaaagctctact-aatacgcattacctctacctaagttacgggaaaagccactaatccacttcccttcagcatttcgaaaaatccctccactacgagc |
3664025 |
T |
|
| Q |
488 |
tga |
490 |
Q |
| |
|
||| |
|
|
| T |
3664026 |
tga |
3664028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 41403985 - 41404267
Alignment:
| Q |
61 |
aaaagataaaactaaacagagatgactctagggg---ctatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccatacaca |
157 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||| | |||||| ||||||||| | |||||| ||||||||||| | || |||||| | |||||||| |
|
|
| T |
41403985 |
aaaagagaaaactagacagagacgactctaggagtcgctatcc-acataacataagctaacaccagagaactaagtctagctggacactagtcatacaca |
41404083 |
T |
|
| Q |
158 |
cgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaag |
257 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| |||| ||||||| ||||||||| |||||| ||||||||||| |||||||| |||||||||| || |
|
|
| T |
41404084 |
tgcaacacaggcataa-ctcacaacccatgtttgaaagagcgtctgcacacgaattcgtctcacggtaagaatgacagatcttcacgtcccactccagag |
41404182 |
T |
|
| Q |
258 |
caagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacact |
342 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||||| |
|
|
| T |
41404183 |
caagcaaccggcgaatttcttgaatgagacgccaaccaacaacacttccatcctaagttgtttgcagggtatgcaccaccacact |
41404267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 354 - 490
Target Start/End: Original strand, 41404302 - 41404438
Alignment:
| Q |
354 |
ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttc |
453 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||| | ||| |||||||||||| || |||||| ||| |||| || | || || ||||||||||| |||| |
|
|
| T |
41404302 |
ctctctctaacaatttggagaccattaaaaactctcaaaatctctgctaaatacgcgttacatttactcaagttacgagataaaccactaatccattttc |
41404401 |
T |
|
| Q |
454 |
cttcagcgtttcgaaaaagccctccactaccagctga |
490 |
Q |
| |
|
||||| | ||| ||||||||| |||||||| |||||| |
|
|
| T |
41404402 |
cttcaacattttgaaaaagccatccactactagctga |
41404438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 591 - 639
Target Start/End: Original strand, 3664098 - 3664146
Alignment:
| Q |
591 |
cacaacactattatccgcttgcttatattgctgcacccaacccataata |
639 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3664098 |
cacaacattattatccgcttgcttatattgttgcacccaacccataata |
3664146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 9493790 - 9493734
Alignment:
| Q |
210 |
aattcgcctcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatc |
266 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| |||||||||| |||| |||||||| |
|
|
| T |
9493790 |
aattcgcctcacgataataatgatacatcttaacttcccactttaaagtaagcaatc |
9493734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 54 - 686
Target Start/End: Complemental strand, 32984724 - 32984062
Alignment:
| Q |
54 |
gcccgagaaaagataaaactaaacagagatgactctagggg---ctatcccacataacatcaactaacatcagagaactaaacccagttggacattgccc |
150 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| || || |||||||||| | |
|
|
| T |
32984724 |
gcccgaaaaaagagaaaattaaacagagatgactctaggggttgctatccc-cataacatcaactaacaccagagaactaagcctagctggacattgctc |
32984626 |
T |
|
| Q |
151 |
atacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccac |
250 |
Q |
| |
|
|||||||||||||| || | | |||| |||||||||||| |||||| ||||||| | |||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
32984625 |
atacacacgcaacctagacgcgtgcttacaacccatgttcgcaagagcgtctgcacatgaattcgcctcacgataagaatgataaatctccacttcccac |
32984526 |
T |
|
| Q |
251 |
tccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa---- |
346 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
32984525 |
tccagagcaagcaatcggcaaatttcttgaatgagacaccaaccaacaacacttccatccttagttgtctgcagggtatgcaccaccacacttgaatcaa |
32984426 |
T |
|
| Q |
347 |
-----------------gcaaaacctctc--tctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagct |
427 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| | |
|
|
| T |
32984425 |
cgtgcaactcaacctttgcaaaacctctctgtctagcaatttggagaccatcaaagactccccaaagctttgctaaatacgcattacatctacccaagtt |
32984326 |
T |
|
| Q |
428 |
atgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaa |
525 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||| | |
|
|
| T |
32984325 |
acgggaaaagccactaatccattttccttcagcatttcaaaaaagccctccactaccggctgaaatatctcttttactagccccatctttattcaaccga |
32984226 |
T |
|
| Q |
526 |
attcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgca |
625 |
Q |
| |
|
|| ||| ||||||| ||||||| |||||| ||||| |||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
32984225 |
atccaaccgtcctctcgtttcttccacataatatcaacttccactcgatgcttactttgcccaccgacaacactattatctgcttgcttatattgctgca |
32984126 |
T |
|
| Q |
626 |
cccaacccataa---tatgtcaagggtggctggagcgaattcgaacctcaccatgcacttctct |
686 |
Q |
| |
|
||||| |||||| || |||||||||| ||| |||||||||| || ||||||||||||||| |
|
|
| T |
32984125 |
cccaatccataatactacatcaagggtggttggggcgaattcgagtcttaccatgcacttctct |
32984062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 150 - 342
Target Start/End: Complemental strand, 3290715 - 3290523
Alignment:
| Q |
150 |
catacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca |
249 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||| | |||||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
3290715 |
catacacacgcaacccaggcgcatgctcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaa |
3290616 |
T |
|
| Q |
250 |
ctccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacact |
342 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | || |||||||| |
|
|
| T |
3290615 |
ctccaaagcaagcaattgacgaaattcttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacact |
3290523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 354 - 624
Target Start/End: Complemental strand, 3290484 - 3290213
Alignment:
| Q |
354 |
ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttc |
453 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||||||||||||| || || ||||| ||||||||||||| | |
|
|
| T |
3290484 |
ctctctctagcaattcagagatcatcaaagactctc-aaagctctgctaaatacacattacatctacccaagttacggaaaaagtcactaatccacttcc |
3290386 |
T |
|
| Q |
454 |
cttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttcta |
551 |
Q |
| |
|
|| || |||| |||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||| ||| ||||||| | ||||||| |
|
|
| T |
3290385 |
ttttaggatttcaaaaaagccctccactaccagctgaaatatctcttttactaacttcatctgtattcaaccaaatccaaccgtcctcgggtttcttccg |
3290286 |
T |
|
| Q |
552 |
cataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgc |
624 |
Q |
| |
|
||| ||||||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3290285 |
catgacatcaacttccacttgatgcttggtatgcccatccacaacactattatccgcttgcttatattgctgc |
3290213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 44888246 - 44888160
Alignment:
| Q |
223 |
ataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatc |
309 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||| |||| | | ||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
44888246 |
ataagaaagacaaatcttcacttctcgctccaaagcaaacaatagacaaatttcttggatgagacggaaaccaacaacgcttccatc |
44888160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 57 - 684
Target Start/End: Original strand, 30464294 - 30464951
Alignment:
| Q |
57 |
cgagaaaagataaaactaaacagagatgactctagggg---ctatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccata |
153 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| |||||| ||||||| |||||||||| |||||| ||||||| ||| || || |||||| | | |||| |
|
|
| T |
30464294 |
cgagaaaagagaaaatcaaacaaagatgactttaggggtcgctatccc-cataacatcagctaacaccagagaaataagcctagctggacactactcata |
30464392 |
T |
|
| Q |
154 |
cacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactcc |
253 |
Q |
| |
|
|||||||||||| | | ||||||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30464393 |
cacacgcaaccccgacgcatgctcacaacccaagtttgcaagagcgtctgcacacgaattcgcctcatgataagaatgacaaatcttcacttcccactcc |
30464492 |
T |
|
| Q |
254 |
aaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa------- |
346 |
Q |
| |
|
| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30464493 |
agagcaagcaatatgcgaatttcttcaatgagacgccaaccaacaacacttccattcttagttgtctgcagggtatgcaccaccacacttgaattaacgt |
30464592 |
T |
|
| Q |
347 |
--------------gcaaaac--ctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatg |
430 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||| | ||| || | |
|
|
| T |
30464593 |
gcaactcaacttttgcaaaacctctctctctagcaatttggagaccatccaagactccccaaagctttgctaaatacgcattacatctatcgaagttacg |
30464692 |
T |
|
| Q |
431 |
ggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaatt |
528 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| || |||||| || ||||||| ||||||||||| ||| |
|
|
| T |
30464693 |
ggaaaagccaccaatccactttccttcagcatttcgaaaaatccctccactaccagctgaaatatctcttttgctggccccatatgtattcaaccgaatc |
30464792 |
T |
|
| Q |
529 |
caatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcaccc |
628 |
Q |
| |
|
||| |||||| | ||||||| |||||||||||| ||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||| | ||||||| |
|
|
| T |
30464793 |
caaccgtcctttggtttcttccacataacatcaacttccactcgatgcttagtatgttcacccacaacactattatctgcttgtttataattttgcaccc |
30464892 |
T |
|
| Q |
629 |
aacccataatat---gtcaagggtggctggagcgaattcgaacctcaccatgcacttct |
684 |
Q |
| |
|
|||| ||||||| | || |||| |||| ||||| || | ||||||||||||||||| |
|
|
| T |
30464893 |
aacctataatattacgccagaggtgtctggggcgaagtcaagcctcaccatgcacttct |
30464951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 59 - 686
Target Start/End: Original strand, 39827396 - 39828052
Alignment:
| Q |
59 |
agaaaagataaaactaaacagagatgactctagggg---ctatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccataca |
155 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| | |||| |||| ||| |||||| |
|
|
| T |
39827396 |
agaaaaaagaaaactaaacagagatgactctaggggtcgctatccct-ataacatcaactaacatcagataactaagtctagtttgacactgctcataca |
39827494 |
T |
|
| Q |
156 |
cacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaa |
255 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| |||| || || ||||||| |||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
39827495 |
cacgcaacccaggagcatgctcacaacaaatgtttgcaagagcgtccgcacacaaattcgcttcacgataagaatgacaaattttcacgtcccactctag |
39827594 |
T |
|
| Q |
256 |
agcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa--------- |
346 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||| |||||| ||||||||||||||| || | | |||| ||||||||||| ||| |
|
|
| T |
39827595 |
agcaaacagtcgaggaatttcttgaatgagacgccaaccagcaacacctccatccttagttgtttgcaagctatgcaccaccacactcgaatcaacgtga |
39827694 |
T |
|
| Q |
347 |
------------gcaaaacctc--tctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatggg |
432 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| |||| | ||| |
|
|
| T |
39827695 |
aactcaacttttgctaaacctctctctctagcaatttggagaccatcaaagacacctcaaagctctgctagatatgcattacatctacacaagttgcggg |
39827794 |
T |
|
| Q |
433 |
aaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattca |
530 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||| ||| || |
|
|
| T |
39827795 |
aaaaaccactaatccactttccttcggcatttcgaaaaagtcctccactaccagctgaaatatctcttttactagcaccatctgtattcaaccgaatcca |
39827894 |
T |
|
| Q |
531 |
atcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacccaa |
630 |
Q |
| |
|
| ||||||| ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
39827895 |
accgtcctctagtttcttccacataacatcaacttccactcgatgcttagtatgctcacccacaacactattatccgcttg-ttttattgttgcacccaa |
39827993 |
T |
|
| Q |
631 |
cccataa---tatgtcaagggtggctggagcgaattcgaacctcaccatgcacttctct |
686 |
Q |
| |
|
||||||| || | || |||||||||| |||||||||| | |||||||||| |||||| |
|
|
| T |
39827994 |
cccataatactacgccaggggtggctggggcgaattcgagcatcaccatgcagttctct |
39828052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 57 - 639
Target Start/End: Original strand, 8160704 - 8161299
Alignment:
| Q |
57 |
cgagaaaagataaaactaaacagagatgactctagggg---ctatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccata |
153 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||| |||||| ||||||||||| | || |||||| ||| || | |
|
|
| T |
8160704 |
cgagaaaagagaaaactaaatagagatgactctaggggtcactatccc-cataacatcagctaacaccagagaactaagcttagctggacactgctcaga |
8160802 |
T |
|
| Q |
154 |
cacacgca----acccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca |
249 |
Q |
| |
|
|||| ||| || || || ||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8160803 |
cacatgcatgtaactcatgcgcatgctcacaatccatgtttgcaagagcgtctgcacacgaattcgcttcacgataagaatgacaaatcttcacttccca |
8160902 |
T |
|
| Q |
250 |
ctccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa--- |
346 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
8160903 |
ctccaaagcaagcaatcagcgaatttcttgaatgag----------acaacacttctatccttagttgtctgcagggtatgcaccaccacacttgaatca |
8160992 |
T |
|
| Q |
347 |
------------------gcaaaacctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagcta |
428 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||||| | |||| ||||||||||| |||||||||||||||||| || |
|
|
| T |
8160993 |
acttgcaactcaacttttgcaaaacctctctctagaaatttggagatcatccaagactctccaaagttctgctaaatacgcattacatctacccaagtta |
8161092 |
T |
|
| Q |
429 |
tgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaa |
526 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| || |||||||| ||||||| || ||||||| |
|
|
| T |
8161093 |
cgggaaaagccactaatccactttccttatgcatttcgaaaaagccctccactaccaactgaaatatctcttttaccggccccatttgcattcaac---- |
8161188 |
T |
|
| Q |
527 |
ttcaatcgtcctccgatttcttctacataacatca----atttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgct |
622 |
Q |
| |
|
||||||| | ||||||| ||||||||||| | |||||||||||||||| || | ||| ||||||||||||||||||||| |||||||| | |
|
|
| T |
8161189 |
------cgtcctctggtttcttccacataacatcaacttaattccactcgatgcttaatatgttcacccacaacactattatccgcttgtttatattgtt |
8161282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 40537781 - 40537872
Alignment:
| Q |
221 |
cgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatcctt |
312 |
Q |
| |
|
|||||||||||||| | || | || |||||||||||| | ||||| ||||||| ||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
40537781 |
cgataagaatgacacactttaattttccactccaaagctaacaatctacgaattttttggatgagtcaccaaccaacaagacttccatcctt |
40537872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 57 - 616
Target Start/End: Original strand, 17139708 - 17140293
Alignment:
| Q |
57 |
cgagaaaagataaaactaaacagagatgactctaggggc---tatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccata |
153 |
Q |
| |
|
|||||||||| ||||||||| || ||| ||||||| || |||||| |||||||||| |||||| || |||||| | | || |||||| ||| |||| |
|
|
| T |
17139708 |
cgagaaaagagaaaactaaagagcgataactctagaggtcgttatccc-cataacatcagctaacaacatagaacttagtctagctggacactgctcata |
17139806 |
T |
|
| Q |
154 |
cacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactcc |
253 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17139807 |
cacacgcaacccaggtgcatgctcacagtccatgtttgcaagagtgtctgcacacgaattcacctcacgataagaatgacaaatcttcacttcccacttc |
17139906 |
T |
|
| Q |
254 |
aaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaagcaa--- |
350 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| || || ||||||||||| ||| ||| |
|
|
| T |
17139907 |
aaagaaagcaatcggcgaatttattgaattagacgccaaccaa-aacacttccatccttagttgtctgcagagtccacaccaccacactcgaatcaacat |
17140005 |
T |
|
| Q |
351 |
------------------aacctctct--ctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatg |
430 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| |||| |||| |
|
|
| T |
17140006 |
gtaactcaaccttcgaaaaacctctctctctagcaatttggagaccatcaaagactccacaaagttctgataaatacgcattacatctactcaagttatg |
17140105 |
T |
|
| Q |
431 |
ggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctg--agttatcttttactagccccatctgtattcaaccaaatt |
528 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || | | ||||||||||||| ||||||||||||||| ||| |
|
|
| T |
17140106 |
ggaaaagccactaatccacttcccttcagcatttcgaaaaagccctccactaccagttggaatatctcttttactagccacatctgtattcaaccgaatc |
17140205 |
T |
|
| Q |
529 |
caatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttat |
616 |
Q |
| |
|
||| | |||| | ||||||| |||||||||||| ||||||||||||||||||| |||||| ||||| ||||| |||||||||||||| |
|
|
| T |
17140206 |
caaccaccctctggtttcttccacataacatcaacttccactcgatgcttagtatgcccacccacaatactatcatccgcttgcttat |
17140293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 56 - 320
Target Start/End: Original strand, 9259361 - 9259617
Alignment:
| Q |
56 |
ccgagaaaagataaaactaaacagagatgactctaggggctatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccataca |
155 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| ||||||| ||| |||| |||||| || | |||| | |||||||| | | | |||||| |
|
|
| T |
9259361 |
ccgagaaaagagaaaactaaatagagatggctctaggg--tatccca--taatatcatctaacaacatataacttggctcagttggatactactcataca |
9259456 |
T |
|
| Q |
156 |
cacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaa |
255 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||| ||||| | || |||||||| || |||||||||||||||||||||| |||||||||| |
|
|
| T |
9259457 |
cacgcaactcaggcgcatgctcataacccatgtttgcaagagcgtctacacacaaattcgccccataataagaatgacaaatcttcactccccactccaa |
9259556 |
T |
|
| Q |
256 |
agcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct |
320 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9259557 |
agcac----tcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct |
9259617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 347 - 562
Target Start/End: Original strand, 9259665 - 9259882
Alignment:
| Q |
347 |
gcaaaacctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatc |
446 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| || || |||| |||||||| |
|
|
| T |
9259665 |
gcaaaacctctctctagcaattcggagaccatcaatgactccccaaagctcttttaaatatgcattacatctacccaagttacggaaaaaatcactaatc |
9259764 |
T |
|
| Q |
447 |
cactttccttcagcgtttcgaaaaagccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatt |
544 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||| ||| ||| | || || || |
|
|
| T |
9259765 |
cacttcccttcaacatttcgaaaaagccctccactaccggttgaaatatctcttttactagccccatctgtattcaaccgaatccaaccatcatctagtt |
9259864 |
T |
|
| Q |
545 |
tcttctacataacatcaa |
562 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
9259865 |
tcttccacataacatcaa |
9259882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 419 - 639
Target Start/End: Complemental strand, 31392294 - 31392072
Alignment:
| Q |
419 |
acccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgta |
516 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||| |||||| | ||| |||| | || |||||| ||||||| ||||| |||||||| ||||| |||| |
|
|
| T |
31392294 |
acccaagttatcggaaaagccaataatccacttcccttcatcattttgaaacaaccatccacttccagctggaatatctcttttactagacccatttgta |
31392195 |
T |
|
| Q |
517 |
ttcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttat |
616 |
Q |
| |
|
||||||| ||| ||| | ||||| ||| |||||||||||| ||| ||| |||||||||||||| |||||| |||| |||||||||| || ||||||| |
|
|
| T |
31392194 |
ttcaaccgaatccaaccatcctctagtttattctacataacaacaacttctgctcgatgcttagtatgcccacccacatcactattatctgcatgcttat |
31392095 |
T |
|
| Q |
617 |
attgctgcacccaacccataata |
639 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31392094 |
attgctgcacccaacccataata |
31392072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 39809566 - 39809383
Alignment:
| Q |
68 |
aaaactaaacagagatgactctagggg---ctatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccatacacacgcaacc |
164 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| | ||||| | || |||||| || | | |||| | | ||||||||||||||| |
|
|
| T |
39809566 |
aaaactaaacagagatgactctaggggtcgctatccc-cataacattagttaacaccggataactaagcctaactagacactactcatacacacgcaacc |
39809468 |
T |
|
| Q |
165 |
caggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttccca |
249 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
39809467 |
taggagcatgctcacaacccatgtttgcaagagtgtctgcacacgaattcgcttcacgataagaatgacaatttttcacttccca |
39809383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 184 - 346
Target Start/End: Complemental strand, 31392483 - 31392321
Alignment:
| Q |
184 |
catgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaa-gcaagcaatcggcgaatttcttgaat |
282 |
Q |
| |
|
||||||||||||| ||| ||| | ||||||| |||| |||| || || |||||||||||||| |||||||| ||||||||||| |||| ||||||| |
|
|
| T |
31392483 |
catgtttgcaagagcgtatgcacaaaaattcgcatcacaataaaaaggaaaaatcttcacttcctactccaaaagcaagcaatcgatgaatc-cttgaat |
31392385 |
T |
|
| Q |
283 |
gagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacacttgaa |
346 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| |||| ||||| | ||||| ||||||||| |
|
|
| T |
31392384 |
gagacaccaaccaacaatacttccatccttagttatctgcagggtccgcaccactacacttgaa |
31392321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 37030949 - 37030818
Alignment:
| Q |
54 |
gcccgagaaaagataaaactaaacagagatgactctaggg--gctatcccacataacatcaactaacatcagagaactaaacccagttggacattgccca |
151 |
Q |
| |
|
|||||||||| || |||| |||||| |||||||||| ||| |||||||| |||||||||||||||| || ||| | |||| | || ||| ||| || |
|
|
| T |
37030949 |
gcccgagaaaggagaaaattaaacacagatgactctggggctgctatccct-ataacatcaactaacaacatcgaatttaacctaactgaacactgctca |
37030851 |
T |
|
| Q |
152 |
tacacacgcaacccaggcacatgctcacaaccc |
184 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |
|
|
| T |
37030850 |
tacacacgcaacccagacgcatgctcacaaccc |
37030818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 57 - 320
Target Start/End: Complemental strand, 19228600 - 19228337
Alignment:
| Q |
57 |
cgagaaaagataaaactaaacagagatgactctaggggc---tatcccacataacatcaactaacatcagagaactaaacccagttggacattgcccata |
153 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||| ||| || |||||||||| |||||| ||||||||||| || ||||||||||||| |||| |
|
|
| T |
19228600 |
cgagaaaagagaaaattaaacagagatgaatctaggggtcattattcc-cataacatcagctaacaccagagaactaagcctagttggacattgctcata |
19228502 |
T |
|
| Q |
154 |
cacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactcc |
253 |
Q |
| |
|
|||||||||||| | | ||||||||||||| ||||||| || | |||| | ||||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
19228501 |
cacacgcaaccccgtcgcatgctcacaacctatgtttggaaaagtgtctacacacgaatttgccttacgataagaatgacaa-tcttcacttcccactcc |
19228403 |
T |
|
| Q |
254 |
aaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatccttagttgtct |
320 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
19228402 |
aa-gcaagcaatcggtgaatttcttgaatgagacgccaaccaacatcactttcatccttagttgtct |
19228337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 353 - 638
Target Start/End: Original strand, 35091963 - 35092256
Alignment:
| Q |
353 |
cctctctctagcaatttggagaccatcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccacttt |
452 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||| ||||||||| |||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
35091963 |
cctctctctagcaattcgaagaccatcaaagactccccaaagctatgctaaatacatattacatctacccaagttactggaaaaaccactaatccacttc |
35092062 |
T |
|
| Q |
453 |
ccttcagcgtttcgaaaaag-ccctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttc |
549 |
Q |
| |
|
||| |||| ||| ||||||| ||| |||||||||||||| || ||||||||||||| ||| || |||||||| ||| ||| |||| | ||||||||| |
|
|
| T |
35092063 |
cctccagcattttgaaaaagcccccccactaccagctgaaatatctcttttactagcctcatttgcattcaaccgaatccaaccgtcttatgatttcttc |
35092162 |
T |
|
| Q |
550 |
tacataacatcaatttccactcgatgcttag----tacgccca-ctcacaacactattatccgcttgcttatattgctgcacccaacccataat |
638 |
Q |
| |
|
||||||||| || || || |||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35092163 |
cacataacatgaactttcatccgatgcttagtatatatgcccaccccacaacactattatccgcttgcttatattgctgcacccaacacataat |
35092256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 35091865 - 35091930
Alignment:
| Q |
277 |
ttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgtaccaccacact |
342 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
35091865 |
ttgattgagacgtcaaccaacaacacttccatccttagttgtgtgcagggtacacaccaccacact |
35091930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 14770716 - 14770794
Alignment:
| Q |
103 |
cataacatcaactaacatcagagaactaaacccagttggacattgcccatacacacgcaacccaggcacatgctcacaa |
181 |
Q |
| |
|
|||||||||| ||||||||| | |||| | | |||| |||| ||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
14770716 |
cataacatcagctaacatcaaataacttagcttagttagacactgcacatacacacgcaacccagtcgcatgctcacaa |
14770794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 11609545 - 11609675
Alignment:
| Q |
157 |
acgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaa |
256 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
11609545 |
acgcaacccatgcatatgctaacaacccatgtttgcaagagcgtctgcacacgaattcgcctcacgataagaatgacaaattttcacttctcactccaaa |
11609644 |
T |
|
| Q |
257 |
gcaagcaatcggcgaatttcttgaatgagac |
287 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |
|
|
| T |
11609645 |
gcaagcaatcggcaaatttcttaaatgagac |
11609675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 12893096 - 12893218
Alignment:
| Q |
139 |
tggacattgcccatacacacgcaacccaggcacatgctcacaacccatgtttgcaagaacgtctgcttacgaattcgcctcacgataagaatgacaaatc |
238 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| |||||| ||||||||||||||||| | ||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
12893096 |
tggacactgctcatacacacgcaactcaggtgcatgcttacaacccatgtttgcaaaagtgtctgtacacgaatttggtacacgataagaatgacaaatc |
12893195 |
T |
|
| Q |
239 |
ttcacttcccactccaaagcaag |
261 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
12893196 |
ttcacttctcactccaaagcaag |
12893218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 12735392 - 12735515
Alignment:
| Q |
207 |
acgaattcgcctcacgataagaatgaca--aatcttcacttcccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacactt |
304 |
Q |
| |
|
||||| |||||| ||||||||||| ||| |||||| |||||||| | ||||||||| ||||| || |||| |||||||||||| ||||||||||||||| |
|
|
| T |
12735392 |
acgaactcgccttacgataagaataacacaaatcttaacttcccagtgcaaagcaagtaatcgacggattttttgaatgagacgtcaaccaacaacactt |
12735491 |
T |
|
| Q |
305 |
ccatccttagttgtctgtagggta |
328 |
Q |
| |
|
|||| |||||||| ||||||||| |
|
|
| T |
12735492 |
tcatctttagttgtttgtagggta |
12735515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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