View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_16 (Length: 679)

Name: NF11930_low_16
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_16
NF11930_low_16
[»] chr6 (1 HSPs)
chr6 (17-661)||(11096099-11096743)


Alignment Details
Target: chr6 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 661
Target Start/End: Original strand, 11096099 - 11096743
Alignment:
Q  17 gaatgtagttgttagatgaaattcaaatttgatcttacaagataaatttggtaaataaatcaccttgtaaagtgactgtacaaagagcttttcatcaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11096099 gaatgtagttgttagatgaaattcaaatttgatcttacaagataaatttggtaaataaatcaccttgtaaagtgactgtacaaagagcttttcatcaaaa 11096198  T
Q  117 cacaagctactcgtgcgtcttaaagaagctgaaaacaacgaaattccatgaattagcaattaaagtagatcgattgttcgggtgatcaaacctaaatatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11096199 cacaagctactcgtgcgtcttaaagaagctgaaaacaacgaaattccatgaattagcaattaaagtagatcgattgttcgggtgatcaaacctaaatatg 11096298  T
Q  217 gttaaaaaggtaacatgtagttcaaaattagaacctggatttgttgaaccactttgcgaagaagtgctacttagatcagaagcagcagaggcattcctcc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11096299 gttaaaaaggtaacatgtagttcaaaattagaacctggatttgttgaaccactttgggaagaagtgctacttagatcagaagcagcagaggcattcctcc 11096398  T
Q  317 gaagccttggaggattattcgaactttcaacgttttgttgacgcaaagtacctctagtttcaccggttgaaggcatcattgaaaaggaaccaaacaaacc 416  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11096399 taagccttggaggattattcgaactttcaacgttttgttgacgcaaagtacctctagtttcaccggttgaaggcatcattgaaaaggaaccaaacaaacc 11096498  T
Q  417 agacattcgttccaaagtcatctcggatattgaccttctgaaacactacataaaaaatatgcaaatgagtcccaaaattttcaccgaactaataactaaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11096499 agacattcgttccaaagtcatctcggatattgaccttctgaaatactacataaaaaatatgcaaatgagtcccaaaattttcaccaaactaataactaaa 11096598  T
Q  517 tgtcttcgatttttctttttcaaagtatatacataacaaaaataacaagttgcaagttagacttactgcttcttttcttggaattccaaatctgctttgc 616  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11096599 tgttttcgatttttctttttcaaagtatatacataaaaaaaataacaagttgcaagttagacttactgcttcttttcttggaattccaaatctgctttgc 11096698  T
Q  617 aactgcacaagggaaaacatgaaatgtatgaatatacgtatatct 661  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  11096699 aactgcacaagggaaaacacaaaatgtatgaatatacgtatatct 11096743  T

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