View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_17 (Length: 669)
Name: NF11930_low_17
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_17 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 65 - 646
Target Start/End: Original strand, 13669429 - 13670010
Alignment:
| Q |
65 |
cagttttcaagcgacgatgaagcatcaccaagagcaatactagatgcccctgtttcaggaacagagtcagacaatagtggaagcagcagtttctcctcgt |
164 |
Q |
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| T |
13669429 |
cagttttcaagcgacgatgaagcatcaccaagagcaatactagatgcccctgtttcaggaacagagtcagacaatagtggaagcagcagtttctcctcgt |
13669528 |
T |
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| Q |
165 |
actcatcggagaattcaccaccggtggagggaaaattaggttggaaggaaagtaacatgatgcaatggaaatcaatgattgatgttttcaagttcaagtc |
264 |
Q |
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| T |
13669529 |
actcatcggagaattcaccaccggtggagggaaaattaggttggaaggaaagtaacatgatgcaatggaaatcaatgattgatgttttcaagttcaagtc |
13669628 |
T |
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| Q |
265 |
agtgagaagattgacagctattccattgcttgctgctgttaacaatgatattgctaagacaggtttccctagaaaattggctaggattcgaagtgctgaa |
364 |
Q |
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| T |
13669629 |
agtgagaagattaacagctattccattgcttgctgctgttaacaatgatattgctaagacaggtttccctagaaaattggctaggattcgaagtgctgaa |
13669728 |
T |
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| Q |
365 |
gaaagtattgacattggtgctattcctactaaaccttcttggaggaattttgattatgatgaacttgctgctgctactaatgatttcagttcaggtatct |
464 |
Q |
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| T |
13669729 |
gaaagtattgacattggtgctattcctactaaaccttcttggaggaattttgattatgatgaacttgctgctgctactaatgatttcagttcaggtatct |
13669828 |
T |
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| Q |
465 |
actaattcgtatcttattgatttatttgagtttatctattttcatagtaagtagttaaactatttaaatatcctgttgaaaaatttatgataagtttata |
564 |
Q |
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| T |
13669829 |
actaattcgtatcttattgatttatctgagtttatctattttcatagtaagtagttaaactatttaaatatcctgttgaaaaatttatgataagtttata |
13669928 |
T |
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| Q |
565 |
tggtgttttcaatttatttttataaaatctcaaagaaagcttataaaaataatttgagattattttatgttttattatagaa |
646 |
Q |
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| T |
13669929 |
tggtgttttcaatttatttttagaaaatctcaaagaaagcttataaaaataatttgagattattttatattttattatagaa |
13670010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 45234192 - 45234147
Alignment:
| Q |
605 |
ttataaaaataatttgagattattttatgttttattatagaaataa |
650 |
Q |
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| T |
45234192 |
ttatgaaaataatttgactttattttatcttttattatagaaataa |
45234147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 610 - 650
Target Start/End: Complemental strand, 20285 - 20245
Alignment:
| Q |
610 |
aaaataatttgagattattttatgttttattatagaaataa |
650 |
Q |
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| T |
20285 |
aaaacaatttgacattattttatgttttattaaagaaataa |
20245 |
T |
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