View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_18 (Length: 663)

Name: NF11930_low_18
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_18
NF11930_low_18
[»] chr4 (6 HSPs)
chr4 (392-626)||(1980597-1980831)
chr4 (119-282)||(1980981-1981144)
chr4 (137-262)||(39634640-39634767)
chr4 (501-625)||(39634264-39634387)
chr4 (135-201)||(33906245-33906312)
chr4 (378-462)||(39634440-39634524)
[»] chr7 (3 HSPs)
chr7 (119-262)||(1097929-1098073)
chr7 (158-219)||(38177860-38177921)
chr7 (378-456)||(25717001-25717077)
[»] chr2 (7 HSPs)
chr2 (135-261)||(32491409-32491537)
chr2 (130-262)||(37098273-37098406)
chr2 (119-252)||(15749444-15749576)
chr2 (378-442)||(37225912-37225976)
chr2 (525-625)||(32491816-32491915)
chr2 (378-418)||(37098130-37098170)
chr2 (160-228)||(37225664-37225732)
[»] chr1 (5 HSPs)
chr1 (119-262)||(4126140-4126285)
chr1 (119-263)||(21907893-21908039)
chr1 (423-467)||(24987349-24987393)
chr1 (423-466)||(21908200-21908243)
chr1 (526-595)||(24987212-24987280)
[»] chr5 (4 HSPs)
chr5 (159-262)||(8874597-8874700)
chr5 (129-262)||(6276611-6276745)
chr5 (119-259)||(29952719-29952863)
chr5 (378-463)||(6276861-6276946)
[»] chr6 (4 HSPs)
chr6 (119-262)||(6552800-6552945)
chr6 (135-260)||(30767546-30767672)
chr6 (386-461)||(30767797-30767872)
chr6 (378-438)||(6553061-6553121)
[»] chr3 (3 HSPs)
chr3 (141-223)||(45012325-45012408)
chr3 (523-598)||(27128824-27128898)
chr3 (159-223)||(45858175-45858239)
[»] chr8 (4 HSPs)
chr8 (378-442)||(44100579-44100643)
chr8 (135-201)||(35958146-35958213)
chr8 (158-223)||(29456626-29456692)
chr8 (119-152)||(29456563-29456596)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 392 - 626
Target Start/End: Complemental strand, 1980831 - 1980597
Alignment:
Q  392 aaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaattaaccctccaattctagggatagtggttcgga 491  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  1980831 aaatctcatgtccttgacactcgtacataattttttctatttagtcaattgttgttctctttttggattaaccctccaattctagtgatagtggttcgga 1980732  T
Q  492 atttgaccaaagaggtaagtaatgtttagtaaaaaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacat 591  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  1980731 atttgaccaaagaggtaagtaatgtttagcaaaaaattgttctactcaagaatcgaactcatgttattttaaaaagttcgtcatttgccaaaaaacacat 1980632  T
Q  592 ttaacccgggaacttatgcactattaattttctac 626  Q
    ||||| |||||||||||||||||||||||||||||    
T  1980631 ttaactcgggaacttatgcactattaattttctac 1980597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 1981144 - 1980981
Alignment:
Q  119 taggctatggtcccctaattaatctaattaaaatattcacatgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||    
T  1981144 taggctatggtcccctaattaatctaattaaaatattcacatgttattagatttattaacaacaaatataaatagttttatatgttatattattttaaat 1981045  T
Q  219 tatcttgtatggtcttttccacaacatattttaaacggaatgaactatagtgatatgattttgc 282  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  1981044 tatcttgtatggtctttttcacaacatattttaaacggaatgaaccatagtgatatggttttgc 1980981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 39634767 - 39634640
Alignment:
Q  137 ttaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggt-ctt 234  Q
    |||||||||||||||| || || || | |||||||| ||||||||| ||||| | || ||||||||||||||| ||||||||| ||||  |||||| |||    
T  39634767 ttaatctaattaaaatgtttaccatatgattagattaattgacaactaatataattagttttatatgttatattattttaaatcatctcatatggtcctt 39634668  T
Q  235 ttccacaacatattttaaacggaatgaa 262  Q
    ||||||||||||||||||| ||||||||    
T  39634667 ttccacaacatattttaaatggaatgaa 39634640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 625
Target Start/End: Complemental strand, 39634387 - 39634264
Alignment:
Q  501 aagaggtaagtaatgtttagtaaaaaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaacccgg 600  Q
    ||||||||||||| ||||    ||||||||||||||| ||||||||||||||||||||  | || | ||| | ||||||  |||||||||||||||||      
T  39634387 aagaggtaagtaaagtttgaccaaaaattgttctactcaagaatcgaactcatgttatcctgaacaatttgttatttgt-taaaaacacatttaacccta 39634289  T
Q  601 gaacttatgcactattaattttcta 625  Q
    |||  ||| |||||||| |||||||    
T  39634288 gaatgtattcactattatttttcta 39634264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 33906245 - 33906312
Alignment:
Q  135 aattaatctaattaaaatattca-catgttattagatttattgacaacaaatatcaataattttatat 201  Q
    |||||||||||||||||| |||| ||| |||||||||| ||||||||| ||||||| || ||||||||    
T  33906245 aattaatctaattaaaatgttcatcatattattagattaattgacaactaatatcattagttttatat 33906312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 39634524 - 39634440
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaattaa 462  Q
    |||| ||||||||||||| ||| ||   | |||||| |||| || | ||||||||||||||||||| |||||||||||| |||||    
T  39634524 ttcttttgtgacaaaaatttcacgtttctcacactcatacaaaaatgtttctatttagtcaattgtcgttctctttttgtattaa 39634440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 1097929 - 1098073
Alignment:
Q  119 taggctatggtcccctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaa 217  Q
    ||||||||||||| | |||||||||||||||||| ||||| |||| |||||||| | ||||||| ||||||| || ||||||||||||||| ||||||||    
T  1097929 taggctatggtcctccaattaatctaattaaaatgttcactatgtcattagattaactgacaactaatatcattagttttatatgttatattattttaaa 1098028  T
Q  218 ttatcttgtatggtcttttccacaacatattttaaacggaatgaa 262  Q
    ||||||  ||||||| ||||||| |||||||||||| ||||||||    
T  1098029 ttatctcatatggtcctttccacgacatattttaaatggaatgaa 1098073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 38177921 - 38177860
Alignment:
Q  158 catgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaatt 219  Q
    ||||||| ||||||||||| ||| |||||||| ||||||||||  |||||| ||||||||||    
T  38177921 catgttactagatttattgtcaataaatatcattaattttatactttatattattttaaatt 38177860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 456
Target Start/End: Original strand, 25717001 - 25717077
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttg 456  Q
    ||||||||||| |||| |||||||||  | |||| |||||| || |||||||||||||||||||| |||| ||||||||    
T  25717001 ttctcttgtgagaaaagtctcatgtctcttacacacgtacacaa-tttttctatttagtcaattg-tgttttctttttg 25717077  T

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Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 32491409 - 32491537
Alignment:
Q  135 aattaatctaattaaaatatt-cac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggtc 232  Q
    |||||||||||||||||| || ||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||  |||||||    
T  32491409 aattaatctaattaaaatgtttcaccatgttattagattaattgacaactaatatcattaattttatatgttatattattttaaattatctcatatggtc 32491508  T
Q  233 ttttccacaacatattttaaacggaatga 261  Q
     ||| || |||||||||||||||||||||    
T  32491509 ctttacataacatattttaaacggaatga 32491537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 37098406 - 37098273
Alignment:
Q  130 cccctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtat 228  Q
    ||||||||||||||||||||||| ||||| || |||||||||| || |||||| ||||||| || ||||||||||||||| |||||||||| ||   |||    
T  37098406 cccctaattaatctaattaaaatgttcaccatattattagattaatagacaactaatatcattagttttatatgttatattattttaaattgtcgcatat 37098307  T
Q  229 ggtcttttccacaacatattttaaacggaatgaa 262  Q
    | || ||||||||| |||||||||| ||||||||    
T  37098306 gctcctttccacaatatattttaaatggaatgaa 37098273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 15749444 - 15749576
Alignment:
Q  119 taggctatggtcccctaattaatctaattaaaatattca-catgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaa 217  Q
    |||| |||||||||| ||||||||||||||||||  ||| |||||||||||||| ||||||||| ||||||| ||||||| || ||||||| ||||| ||    
T  15749444 taggttatggtcccccaattaatctaattaaaatgatcagcatgttattagattaattgacaactaatatcattaattttttacgttatattatttttaa 15749543  T
Q  218 ttatcttgtatggtcttttccacaacatattttaa 252  Q
    ||| ||   |||||| ||||| |||||||| ||||    
T  15749544 ttaact--catggtcctttccgcaacatatgttaa 15749576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 37225912 - 37225976
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattg 442  Q
    |||||||||||| ||||||||||||  || ||||||||| | ||| |||||||||||||||||||    
T  37225912 ttctcttgtgactaaaatctcatgtgattcacactcgtaaacaatattttctatttagtcaattg 37225976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 625
Target Start/End: Original strand, 32491816 - 32491915
Alignment:
Q  525 aaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaacccgggaacttatgcactattaattttct 624  Q
    ||||||||||||| || |||||||  |||||||| || || | ||| ||||||  | |||||||||||||||||  |||  |||||||||||| ||||||    
T  32491816 aaattgttctactcaataatcgaatacatgttatcttgaacaatttgtcattta-ctaaaaacacatttaaccctagaaggtatgcactattatttttct 32491914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 37098170 - 37098130
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtaca 418  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  37098170 ttctcctgtgacaaaaatctcatgtctttcacactcgtaca 37098130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 37225664 - 37225732
Alignment:
Q  160 tgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtat 228  Q
    |||||||||||  ||||||||| ||||||| || |||||||  | |||  |||||||||||||||||||    
T  37225664 tgttattagatcaattgacaactaatatcattagttttatacttaatacaattttaaattatcttgtat 37225732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 4126285 - 4126140
Alignment:
Q  119 taggctatggtccc-ctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaa 216  Q
    |||||||||||||| | |||||||||||| ||||| ||||| || |||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||    
T  4126285 taggctatggtccctccaattaatctaatcaaaatgttcaccatattattagattaattgacaactaatatcattaattttatatgttatattattttaa 4126186  T
Q  217 attatcttgtatggtcttttccacaacatattttaaacggaatgaa 262  Q
    |||||||  |||| || |||||| |||||||||||||  |||||||    
T  4126185 attatctcatatgatcctttccataacatattttaaattgaatgaa 4126140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 21907893 - 21908039
Alignment:
Q  119 taggctatggtcccct-aattaatctaattaaaatattcaca-tgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaa 216  Q
    |||| ||||||||||| |||||||||||||||||| || ||| |||||||||||| ||||||||| ||||||| |  ||||||||||||||  |||||||    
T  21907893 taggttatggtcccctcaattaatctaattaaaatgtttacaatgttattagattaattgacaactaatatcatttgttttatatgttatagtattttaa 21907992  T
Q  217 attatcttgtatggtcttttccacaacatattttaaacggaatgaac 263  Q
    |||||||   |||||  ||| | || ||||||||||| |||||||||    
T  21907993 attatctcacatggttcttttcgcatcatattttaaatggaatgaac 21908039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 24987393 - 24987349
Alignment:
Q  423 tttttctatttagtcaattgttgttctctttttgaattaaccctc 467  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||    
T  24987393 tttttctatttagtcaattgacgttctctttttgtattaaccctc 24987349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 21908200 - 21908243
Alignment:
Q  423 tttttctatttagtcaattgttgttctctttttgaattaaccct 466  Q
    ||||||||||||||||||||| |||||||||||| |||| ||||    
T  21908200 tttttctatttagtcaattgtcgttctctttttgtattagccct 21908243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 24987280 - 24987212
Alignment:
Q  526 aattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaa 595  Q
    |||||||||||| ||||||||||||||| ||||  | |||| ||| ||||||| | ||||||||||||||    
T  24987280 aattgttctacttaagaatcgaactcatattatactgaaaattttgtcatttg-ctaaaaacacatttaa 24987212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 8874700 - 8874597
Alignment:
Q  159 atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggtcttttccacaacatattttaaacggaa 258  Q
    ||||||||||||| ||||||||| ||||||| || | ||||||||||||| ||||||| ||||||  ||||||| |||||||||||||||||||| ||||    
T  8874700 atgttattagattaattgacaactaatatcattagtcttatatgttatattattttaatttatctcatatggtcatttccacaacatattttaaatggaa 8874601  T
Q  259 tgaa 262  Q
    ||||    
T  8874600 tgaa 8874597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 6276611 - 6276745
Alignment:
Q  129 tcccctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgta 227  Q
    ||||| |||||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||| || || | ||||||||||| ||||||||||| |  ||    
T  6276611 tcccccaattaatctaattaaaatgttcaccatgtcattagattaattgacaactaatatcattagttatgtatgttatatccttttaaattatttcata 6276710  T
Q  228 tggtcttttccacaacatattttaaacggaatgaa 262  Q
    ||| | ||| ||||| |||||||||| ||||||||    
T  6276711 tggccattttcacaaaatattttaaatggaatgaa 6276745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 259
Target Start/End: Original strand, 29952719 - 29952863
Alignment:
Q  119 taggctatggtcccct-aattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttata--tcatttt 214  Q
    |||||||| ||||||| |||| || |||||||||  ||||| || |||||||||||||||||||| | ||| | || ||| ||||||||||  | |||||    
T  29952719 taggctatagtcccctcaattgatttaattaaaacgttcaccatattattagatttattgacaactagtattattagtttgatatgttatattttatttt 29952818  T
Q  215 aaattatcttgtatggtcttttccacaacatattttaaacggaat 259  Q
    |||||||||   || ||| ||||| |||||||||||||| |||||    
T  29952819 aaattatctcacattgtcctttcctcaacatattttaaatggaat 29952863  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 463
Target Start/End: Original strand, 6276861 - 6276946
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaattaac 463  Q
    ||||| |||||||||||| ||||||| || ||| ||||||| || || ||||||| |||||||||  |||||| ||||| ||||||    
T  6276861 ttctcctgtgacaaaaatttcatgtctttcacattcgtacaaaagttcttctattaagtcaattgccgttctcattttgtattaac 6276946  T

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Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 6552800 - 6552945
Alignment:
Q  119 taggctatggtcccct-aattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaa 216  Q
    |||| ||||| ||||| ||||||| ||||| |||| ||||| ||  |||||||||  |||||||| ||||||| || |||||||| |||||| |||||||    
T  6552800 taggttatggccccctcaattaatttaattcaaatgttcaccataatattagattatttgacaactaatatcattagttttatatattatattattttaa 6552899  T
Q  217 attatcttgtatggtcttttccacaacatattttaaacggaatgaa 262  Q
    |||||||  ||||||| |||||||||||||||||||| ||||||||    
T  6552900 attatctcatatggtcctttccacaacatattttaaatggaatgaa 6552945  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 30767546 - 30767672
Alignment:
Q  135 aattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggtct 233  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||| |||| || || |||||||||||||   ||||||| |||| |  ||| ||      
T  30767546 aattaatctaattaaaatatttactatgttattagattaattgacaactaatagcattagttttatatgttatgatattttaagttatttcatatagttc 30767645  T
Q  234 tttccacaacatattttaaacggaatg 260  Q
    |||||||||||||||||||| ||||||    
T  30767646 tttccacaacatattttaaatggaatg 30767672  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 30767797 - 30767872
Alignment:
Q  386 tgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaatta 461  Q
    |||||||||| |||||||  | ||||||||| | || || |||||||||||||| ||| |||||||||||| ||||    
T  30767797 tgacaaaaatatcatgtctctcacactcgtaaaaaagttcttctatttagtcaactgtcgttctctttttgtatta 30767872  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 6553061 - 6553121
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtca 438  Q
    ||||| ||||||||||| |||||||| || ||||||||||| || || |||||| ||||||    
T  6553061 ttctcctgtgacaaaaaactcatgtctttcacactcgtacaaaagttcttctatatagtca 6553121  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 45012325 - 45012408
Alignment:
Q  141 tctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatct 223  Q
    ||||||||||||||| || ||||||||||||| ||||||||| ||||| | || ||||||||||||||| ||||||||||||||    
T  45012325 tctaattaaaatatttaccatgttattagattaattgacaactaatattattagttttatatgttatattattttaaattatct 45012408  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 598
Target Start/End: Complemental strand, 27128898 - 27128824
Alignment:
Q  523 aaaaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaaccc 598  Q
    |||||||||||||||||| |||| || ||||||||| || || | ||||||||| | | |||||||||||||||||    
T  27128898 aaaaattgttctactaaaaaatcaaattcatgttatcttgaacaatttatcattggac-aaaaacacatttaaccc 27128824  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 45858239 - 45858175
Alignment:
Q  159 atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatct 223  Q
    |||||| |||||| |||| || | ||||||| ||||||||||  |||||| ||||||||||||||    
T  45858239 atgttactagattaattggcagctaatatcattaattttatactttatattattttaaattatct 45858175  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 44100579 - 44100643
Alignment:
Q  378 ttctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattg 442  Q
    |||||||||||||||||| ||||||| || ||||||||||| || ||||||||||||||||||||    
T  44100579 ttctcttgtgacaaaaatatcatgtctttcacactcgtacacaagtttttctatttagtcaattg 44100643  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 35958146 - 35958213
Alignment:
Q  135 aattaatctaattaaaatattca-catgttattagatttattgacaacaaatatcaataattttatat 201  Q
    |||||||||||||||||| |||| ||| ||||||| || ||||||||| ||||||| || ||||||||    
T  35958146 aattaatctaattaaaatgttcatcatattattaggttaattgacaactaatatcattagttttatat 35958213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 29456626 - 29456692
Alignment:
Q  158 catgttattagatttattga-caacaaatatcaataattttatatgttatatcattttaaattatct 223  Q
    ||||||| |||||| ||||  |||| ||||||||||||||||||  |||||| ||||||||||||||    
T  29456626 catgttactagattaattgggcaactaatatcaataattttatactttatattattttaaattatct 29456692  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 29456563 - 29456596
Alignment:
Q  119 taggctatggtcccctaattaatctaattaaaat 152  Q
    ||||||||||||||| ||||||||||||||||||    
T  29456563 taggctatggtcccccaattaatctaattaaaat 29456596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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