View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_19 (Length: 662)
Name: NF11930_low_19
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 6432354 - 6432717
Alignment:
| Q |
1 |
gcctcttttggatagttcactggctaaagggttatgtgttgatggcaagtttagaaggttgtatgatttaccagaaaacaaatcggtgaagatagtggag |
100 |
Q |
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| T |
6432354 |
gcctcttttggatagttcactggctaaagggttatgtgttgatggcaagtttagaaggttgtatgatttatcagaaaacaaatcggtgaaggtagtggag |
6432453 |
T |
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| Q |
101 |
atgtgttcattagggtgggtagagggcgatgatggttggaagcggcggcgtaagttgttggtgtgggaggaggaacatatggggaagtgttgtttgttat |
200 |
Q |
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| T |
6432454 |
atgtggtcattagggtgggtagagagcgatgatagttggaagcggcggcgtaagttgttggtgtgggaggaggaacatatgggggagtgtagtttgttat |
6432553 |
T |
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| Q |
201 |
tgtctagtattttcttgcggtgggtgtggaagataaatgaaattggaatattgatcct-ataaagggaactctgttcgagtggctta-tattcgctatgt |
298 |
Q |
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| T |
6432554 |
tgtctagtattttcttgcggtgggtgtggaagataaatgaaattggagtcttgatcctgataaagggaactctatttgagtggcttattattcgctatgt |
6432653 |
T |
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| Q |
299 |
tttgtgatgcaagatgagatatcgaaatactatgacatggtgtggaagaaagagacacctttga |
362 |
Q |
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| T |
6432654 |
tttgtgatgcaagatgagatatcaaaatactatgacatggtgtggaagaaagagacacctttga |
6432717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 472 - 646
Target Start/End: Original strand, 6433379 - 6433560
Alignment:
| Q |
472 |
ctactgtacacatttttaaagagggct-------actattgtccaaaacgaaatacatgtagagttacactcttcattgtacttgtacacaattaagttt |
564 |
Q |
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| T |
6433379 |
ctactgtacacatttctaaagagggctcctgcctactattgtccaaaacgaaatacatgtagagttacactcttcattgtacttgtacacaattaagttt |
6433478 |
T |
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| Q |
565 |
gttgaaaaactgttcggtcacaaaattaagtttggtgaaaaaactctttggcccccgaccccgttaaaagtaaattaatatg |
646 |
Q |
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| T |
6433479 |
gttgaaaaactgttcggtcacaaaattaagtttggtgaaaaaactctttggcccccgaccccgttaaaagtaaattaatatg |
6433560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 6432718 - 6432763
Alignment:
| Q |
430 |
tgacttcctatgaaaggtaatatgatacatcgtgaaatcattctac |
475 |
Q |
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| T |
6432718 |
tgacttcctatgaaaggtaatctgatacatcgtgaaatcattctac |
6432763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 25704147 - 25704088
Alignment:
| Q |
414 |
gaggttattactaaattgacttcctatgaaaggtaatatgatacatcgtgaaatcattct |
473 |
Q |
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| T |
25704147 |
gaggttattactaaactgactacttacgaaagataatttgatacatcgtggaatcattct |
25704088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 34968786 - 34968689
Alignment:
| Q |
121 |
agagggcgatgatggttggaagcggcggcgtaagttgttggtgtgggaggaggaacatatggggaagtgttgtttgttattgtctagtattttcttgc |
218 |
Q |
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| T |
34968786 |
agagggtgaggatggttgaaagtggcggcgtccatttttggtgtcggaggatgaacaaatggggtagtatagcttgttattggctaatattttcttgc |
34968689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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