View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_20 (Length: 629)
Name: NF11930_low_20
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 125 - 419
Target Start/End: Complemental strand, 41842249 - 41841955
Alignment:
| Q |
125 |
ttgttcactgttttagaaacttattttgtctggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggtgattgatt |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41842249 |
ttgttcactgttttagaaacttattttgtctggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggggattgatt |
41842150 |
T |
|
| Q |
225 |
ccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatgttcttcttagagaagaggattacgatgaagattatttagcgaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| || |
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| T |
41842149 |
ccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatcttcttcttagagaagagaattactatgaagattatttagctaa |
41842050 |
T |
|
| Q |
325 |
aatgagaggaactcaaagtgaaaggatgaagatcttataccattcctcatttcctcctaatggctccagtagcttcgtatcggcagattctatgg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41842049 |
aatgagaggaactcaaagtgaaaggatgaagatcttataccattcctcatttcctccttatggctccagtagcttcgtatcggcagattctatgg |
41841955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41842400 - 41842269
Alignment:
| Q |
1 |
agtaaagaaacttgcggagattgatttcctttaactttatgttgaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41842400 |
agtaaagaaacttgcggagattgatttcctttaactttatgttgaaacagcctaacaaaatagaaaaaagttgatttcaatagcaccatttcatcctcaa |
41842301 |
T |
|
| Q |
101 |
caagatttcttgagttattgttagttgttcac |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
41842300 |
caagatttcttgagttattgttagttgttcac |
41842269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 510 - 611
Target Start/End: Complemental strand, 41841509 - 41841408
Alignment:
| Q |
510 |
ccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgtatcctt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41841509 |
ccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgtatcctt |
41841410 |
T |
|
| Q |
610 |
tg |
611 |
Q |
| |
|
|| |
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|
| T |
41841409 |
tg |
41841408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 505 - 612
Target Start/End: Complemental strand, 42221203 - 42221096
Alignment:
| Q |
505 |
ttcatccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgta |
604 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| || |
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| T |
42221203 |
ttcatccagggattaaaaatattcattggagagcttctcaaaatctgtaaaacgtattgttggcatgagatttgtccttgttggaagctcaaatcatata |
42221104 |
T |
|
| Q |
605 |
tcctttgt |
612 |
Q |
| |
|
|||||||| |
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|
| T |
42221103 |
tcctttgt |
42221096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 42090105 - 42090198
Alignment:
| Q |
38 |
tatgttgaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| | ||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| |
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|
| T |
42090105 |
tatgttgaaacagcccaacagaatagaaaa-agttgattcccatatcaccatttcatcctcaacaagttttcttgggttattattagttgttcac |
42090198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 364
Target Start/End: Original strand, 42090224 - 42090453
Alignment:
| Q |
131 |
actgttttagaaacttattttgtctggttactgtg--catatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggtgattgattccga |
228 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||| ||||||| ||||| |||||||||||| |||||||||||| | | | | |||||||||||| |
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|
| T |
42090224 |
actgttttagaaacttgcttcatcttgttactgtgaacatatgttagatttgacaccatgaaaattgtgctacattgcgaacagtagggattgattccga |
42090323 |
T |
|
| Q |
229 |
gaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatgttcttcttagagaagaggattacgatgaagattatttagcgaaaatg |
328 |
Q |
| |
|
|||||| |||||||||||||||||||| | | |||||||||| ||| | | |||||||| ||||| ||||| || | |||||||| ||||| |
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| T |
42090324 |
gaaagagtattcgggaaagtttgctatagactgcagtgtgattcattcgc---tggttcttagaaaagagaattactgtgca---tatttagctaaaata |
42090417 |
T |
|
| Q |
329 |
agaggaactcaaagtgaaaggatgaagatcttatac |
364 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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| T |
42090418 |
ggaggtactcaaagtgaaaggatgaagatcttatac |
42090453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 42221292 - 42221251
Alignment:
| Q |
426 |
gaattagaagaaaaggaggaagaagaaagactcaaattcaat |
467 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
42221292 |
gaattagaagaaaaagagggagaagaaagactcaaactcaat |
42221251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11653152 - 11653021
Alignment:
| Q |
1 |
agtaaagaaacttgcggagattgatttcctttaactttatgttgaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11653152 |
agtaaagaaacttgcggagattgatttcctttaactttacgttgaaacagcctaacagaatagaaaaaagttgatttcaatagcaccgtttcatcctcaa |
11653053 |
T |
|
| Q |
101 |
caagatttcttgagttattgttagttgttcac |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
11653052 |
caagatttcttgagttattgttagttgttcac |
11653021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 418 - 507
Target Start/End: Complemental strand, 11652754 - 11652665
Alignment:
| Q |
418 |
ggagtttggaattagaagaaaaggaggaagaagaaagactcaaattcaatgcacagtagccatcattatattttaattccctttccattc |
507 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
11652754 |
ggagtttggaattagaagaaaaggagggagaagaaagactcaaattcaattcacagtagccaacattatatttcaattccctttccattc |
11652665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 505 - 611
Target Start/End: Complemental strand, 3461499 - 3461396
Alignment:
| Q |
505 |
ttcatccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgta |
604 |
Q |
| |
|
|||||| ||| |||||||||| ||||||| ||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||||| ||| |
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|
| T |
3461499 |
ttcatctagcgattaaaaatattcattggagagcttctcaaaatctgtaaaatgta---ttggcaaaagatttgtccttgttggaagctcaaatcatgta |
3461403 |
T |
|
| Q |
605 |
tcctttg |
611 |
Q |
| |
|
||||||| |
|
|
| T |
3461402 |
tcctttg |
3461396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 3461594 - 3461557
Alignment:
| Q |
419 |
gagtttggaattagaagaaaaggaggaagaagaaagac |
456 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
3461594 |
gagtttggaattagaagaaaagaagggagaagaaagac |
3461557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 419 - 612
Target Start/End: Complemental strand, 1716906 - 1716703
Alignment:
| Q |
419 |
gagtttggaattagaagaaaaggaggaagaagaaagactcaaattcaatgcacagta-----gccatcattata------ttttaattccctttccattc |
507 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||| || || | ||||||||| | ||| |||| ||||| ||| |
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|
| T |
1716906 |
gagtttggaattagaagaaaaggagggagaagaaagactcaaactcaattcataggactgcagccatcatttttattcgctttccattcattttcc-ttc |
1716808 |
T |
|
| Q |
508 |
atccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgtatcc |
607 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1716807 |
atccagggattaaaaatattcattggagagcttctcaaaatctgtaaaatgtattgttggcatgagatttgtccttgttggaagctcaaatcacgtatcc |
1716708 |
T |
|
| Q |
608 |
tttgt |
612 |
Q |
| |
|
||||| |
|
|
| T |
1716707 |
tttgt |
1716703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 611
Target Start/End: Complemental strand, 2841313 - 2841274
Alignment:
| Q |
572 |
agatttgtccttgttggaagctcaaatcacgtatcctttg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2841313 |
agatttgtccttgttggaagctcaaatcacgcatcctttg |
2841274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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