View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_22 (Length: 618)
Name: NF11930_low_22
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 16 - 608
Target Start/End: Original strand, 46750415 - 46751007
Alignment:
| Q |
16 |
cactctccacactaacgaaaacaacattattaaaaaacaacaacacttctttgtgttctctcaacacaacaagtcataagcaacaacattagttgaattc |
115 |
Q |
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| T |
46750415 |
cactctccacactaacgaaaacaacattattaaaaaacaacaacacttctttgtgttctctcaacacaacaagtcataaacaacaacattagttgaattc |
46750514 |
T |
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| Q |
116 |
attagtttcaaacatcatggagctagagctcttgtcttggctcaaacttgtttcattttctttcatatttcttctatgtgttctcaaagtaacagtgtta |
215 |
Q |
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| T |
46750515 |
attagtttcaaacatcatggagctagagctcttgtcttggctcaaacttgtttcattttctttcatatttcttctatgtgttctcaaagtaacagtgtta |
46750614 |
T |
|
| Q |
216 |
ctatggtggagaccaagaaaaattgaaggctattttgctaaacaaggaattagaggacctccttatcatttcttcattggaaatgttaaagaacttgttg |
315 |
Q |
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| T |
46750615 |
ctatggtggagaccaagaaaaattgaaggctattttgctaaacaaggaattagaggacctccttatcatttcttcattggaaatgttaaagaacttgttg |
46750714 |
T |
|
| Q |
316 |
gtatgatgttgaaagcttcttctcaacccatgcctaatttctctcacaacattcttcctagagtcctttctttctatcatcactggaagaaaatttacgg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46750715 |
gtatgatgttgaaagcttcttctcaacccatgcctaatttctctcacaacattcttcctagagtcctttctttctatcatcactggaagaaaatttacgg |
46750814 |
T |
|
| Q |
416 |
tacttaattgtttattaactcttcttcacttttttatgtgcatatatttaactcttcattttgatatttatgcatacttagaaatgcattttattttaag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46750815 |
tacttaattgtttattaactcttcttcacttttttatgtgcatatatttaactcttcattttgatatttatgcatacttagaaatgcattttattttaag |
46750914 |
T |
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| Q |
516 |
aatatttttagtcatgaccatcatcattaaagtttgggttgagcagtagcatgatgatggtgatgatgattattatgttttcttttaccagtt |
608 |
Q |
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| T |
46750915 |
aatatttttagtcatgaccatcatcattaaagtttgggttgagcagtagcatgatgatggtgatgatgattattatgttttcttttaccagtt |
46751007 |
T |
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