View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_23 (Length: 611)
Name: NF11930_low_23
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 597
Target Start/End: Original strand, 10462424 - 10463010
Alignment:
| Q |
11 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
110 |
Q |
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| T |
10462424 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
10462523 |
T |
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| Q |
111 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactccnnnnnnnnnnnnnnnnnn |
210 |
Q |
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| T |
10462524 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactccaaaatataaataaataaa |
10462623 |
T |
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| Q |
211 |
nnnnnnggccagcttgcataaatcagggagggagaatacaaaaaactattcttccacatacaaaaaactggacttatcaattttagtgttcggctatatg |
310 |
Q |
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| T |
10462624 |
tatataggccagcttgcataaatcagggagggagaatacaaaaaactattcttccacatacaaaaaactggacttatcaattttagtgttcggctatatg |
10462723 |
T |
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| Q |
311 |
gaattgtaccggacaagaacaaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttg |
410 |
Q |
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| T |
10462724 |
gaattgtaccggacaagaacaaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttg |
10462823 |
T |
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| Q |
411 |
gaaaaaatgtaggaagattgattgaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaattt |
510 |
Q |
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| T |
10462824 |
gaaaaaatgtaggaagattgattgaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaattt |
10462923 |
T |
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| Q |
511 |
gtttagccacaatgttgaattagttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattct |
597 |
Q |
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| T |
10462924 |
gtttagccacaatgttgaattagttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattct |
10463010 |
T |
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