View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_24 (Length: 609)
Name: NF11930_low_24
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 42003904 - 42003377
Alignment:
| Q |
1 |
gtttcagccaggtactcaaatattggaatgtggacatatatgacttgtccgcatatataattaagacatatgttgtgttaccgactttgaaagtaacgta |
100 |
Q |
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| T |
42003904 |
gtttcatccaggtactcaaatattggaatgtggacatatatgacttgtccacatatataattaagacatatgttgtgttaccaactttgaaagtaacgta |
42003805 |
T |
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| Q |
101 |
tagtacattgtgtatgttttactagaagatacatgtgttggtcccatagacattaatgcattgtctaccttagagtttgttaaaatcatgtgatcttgac |
200 |
Q |
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| T |
42003804 |
tagtacattgtgtatgttttactagaagatacatgtgttggtcccatagacattaatgcattgtctaccttagagtttgttaaaatcatgtgatcttgac |
42003705 |
T |
|
| Q |
201 |
agattcatgaacgttaagagtgttctcctgccttgcaggtcttgaaattgaaacttgtcttcgagagagacagctaatttaatgacccaaaaacatgttt |
300 |
Q |
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| T |
42003704 |
agattcatgaacgttaagagtgttctccagccttgcaggtcttgaaattgaaacttgtcttcgagagagacagctaatttaatgacccaaaaacatgttt |
42003605 |
T |
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| Q |
301 |
tcattttcaagggtaggatgatagtgttactatctactgggagtgaagggtgccccactatattagtagagaccataacaatttatctagtttatgccaa |
400 |
Q |
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| T |
42003604 |
tcattttcaagggtaggatgatagtgttactatctactgggagtgaagggtgccccactatattagtagagaccataacaatttatctagtttatgccaa |
42003505 |
T |
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| Q |
401 |
aacaatcttgtctattttttactcttgnnnnnnnntaatgctaacaaatgttcttaaaacactagttaagaaaacgtatataataatttattttgaaatt |
500 |
Q |
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| T |
42003504 |
aacaatcttgtcttttttttactcttgaaaaaaaataatgctaacaaatgttcttaaaacactagttaagaaaacgtatataataatttattttgaaatt |
42003405 |
T |
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| Q |
501 |
tgtgcaaaaaatactcttttcaatgaaa |
528 |
Q |
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| T |
42003404 |
tgtgcacaaaatactcttttcaatgaaa |
42003377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 138 - 360
Target Start/End: Complemental strand, 42012519 - 42012292
Alignment:
| Q |
138 |
ttggtcccatagacattaatgcattgtctaccttagagtttgttaaaatcatgtgatct-------tgacagattcatgaacgttaa-gagtgttctcct |
229 |
Q |
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| T |
42012519 |
ttggtcccaaagaca--aatgcattgtctaccttagagtttgttaaaatcatgtgatatatggtgttgatggattcatgaatgttaaagagtgttc--ca |
42012424 |
T |
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| Q |
230 |
gccttgcaggtcttgaaattgaaacttgtcttcg-agagagacagctaatttaatgacccaaaaacatgttttcattttcaagggtaggatgatagtgtt |
328 |
Q |
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| T |
42012423 |
gccttgcagatcatgaaattgaaaattgtcttagcagatagacagctaattgagcgacccaagaacttgctcttgttttccagggaagcatgagagtgtt |
42012324 |
T |
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| Q |
329 |
actatctactgggagtgaagggtgccccacta |
360 |
Q |
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| T |
42012323 |
actatctattgggagtaaagggtaccccacta |
42012292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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