View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_25 (Length: 594)
Name: NF11930_low_25
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 403 - 576
Target Start/End: Original strand, 6278929 - 6279102
Alignment:
| Q |
403 |
ggctcagtaaataggtgacctaatgtaaaagatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatggaag |
502 |
Q |
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| T |
6278929 |
ggctcagtaaatagatgacctaatgtaaaagatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatgtaag |
6279028 |
T |
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| Q |
503 |
gatatttggagattatcatattcaaattttggccaaaaccaccacccacatcaaccaacaatgatatgtcttca |
576 |
Q |
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| T |
6279029 |
gatatttggagattatcatattcaaattttggccaaaaccaccacccacatcaaccaacaatgatatgtcttca |
6279102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 165 - 328
Target Start/End: Original strand, 6278691 - 6278854
Alignment:
| Q |
165 |
aattattaatagtttccctaactttattgtactgaatttgttaggagataaacaaataaaattactcatactatgggcatgttcaaaggtagtctttcat |
264 |
Q |
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| T |
6278691 |
aattattaatagtttccctaactttattgtactgaatttgttaggagataaacaaataaagttactcatactctgggcatgttcaaaggtagtctttcat |
6278790 |
T |
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| Q |
265 |
atatgttttgttttgttaatattatattatgttagtaattgaatttctattaaaaatcatctat |
328 |
Q |
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| T |
6278791 |
atatgttttgttttgttaatattatattatgttagtaattgaatttctgttaaaaatcatctat |
6278854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 6278591 - 6278693
Alignment:
| Q |
11 |
tgagatgttatcgatcaattaatt-caaagtcttacgaagtgcatnnnnnnntgtttcttaaaaatataagttaaatacttttcaaaatcataattacat |
109 |
Q |
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| T |
6278591 |
tgagatgttatcgatcaattaatttcaaagtcttacgaaatgcataaaaaaatgtttcttaaaaatataagttaaatacttttcaaaatcataattacat |
6278690 |
T |
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| Q |
110 |
aat |
112 |
Q |
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| T |
6278691 |
aat |
6278693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 433 - 569
Target Start/End: Original strand, 6283025 - 6283161
Alignment:
| Q |
433 |
gatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatggaaggatatttggagattatcatattcaaatttt |
532 |
Q |
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| T |
6283025 |
gatatacctggataaattggagcatgttgtataacttggggcaaatcaaaattaatgccctttatagaaggatacttagagattatcatattcaaacttt |
6283124 |
T |
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| Q |
533 |
ggccaaaaccaccacccacatcaaccaacaatgatat |
569 |
Q |
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| T |
6283125 |
gcccaattcctcctccaacatcaaccaatattgatat |
6283161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 32461952 - 32461908
Alignment:
| Q |
66 |
tcttaaaaatataagttaaatacttttcaaaatcataattacata |
110 |
Q |
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| T |
32461952 |
tcttaaaaatataagttaaataattttcgaaataataaatacata |
32461908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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