View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_26 (Length: 583)
Name: NF11930_low_26
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 23939415 - 23939649
Alignment:
| Q |
22 |
atagccaaagatggaaagtatagtgtgagtgatgtgatgatgacagaagaagggagagcacactcccaacaaaggcaaagactctctttacaaccattcc |
121 |
Q |
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| T |
23939415 |
atagccaaagatggaaagtatagtgtgagtgatgtgatgatgacagaagaagggagagcacactcccaacaaaggcaaagactctctttacaaccattcc |
23939514 |
T |
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| Q |
122 |
cgggttgtgctctctctcttctgtcaacatgaaatgtctcatcacatatttcctcaactataccaaccaacaaaacccttcttgccatgcattcttctac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23939515 |
cgggttgtgctctctctcttctgtcaacatgaaatgtctcatcacatatttcctcaactataccaaccaacaaaacccttcttgccatgcattcttctac |
23939614 |
T |
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| Q |
222 |
atattcattattttatcaaatcacctgcaattatg |
256 |
Q |
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||||||| |||||||||||||||||||||| |||| |
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| T |
23939615 |
atattcaatattttatcaaatcacctgcaaatatg |
23939649 |
T |
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