View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_3 (Length: 901)
Name: NF11930_low_3
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_3 |
 | |
|
| [»] scaffold0549 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 840; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 1 - 884
Target Start/End: Complemental strand, 11365010 - 11364127
Alignment:
| Q |
1 |
caatgaagtaagcaattcttgatccataatcaaaggaaccttgcatcttagcccaagccattgaagcaacacttggtgctgcaacaaagagaaagaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11365010 |
caatgaagtaagcaattcttgatccataatcaaaggaaccttgcatcttagcccaagccattgaagcaacacttggtgctgcaacaaagagaaagaacac |
11364911 |
T |
|
| Q |
101 |
tggatgtagctctttaggtagggtctcatttgttggaagtcgttgataaagtgtcacaaataacacaatgtaatgagcaagtccaacagcaaagaagaag |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364910 |
tggatgtagctctttaggtagtgtctcatttgttggaagtctttgataaagtgtcacaaataacacaatgtaatgagcaagtccaacagcaaagaagaag |
11364811 |
T |
|
| Q |
201 |
ataggtccttctactagtcccattgaagcaccaagtaatgctccgacaaaatttccaacaatcgataaatgattcgaagggtttgccacctttgaaagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364810 |
ataggtccttctactagtcccattgatgcaccgagtaatgctccgacaaaatttccaacaatcgataaatgattcgaagggtttgccacctttgaaagcc |
11364711 |
T |
|
| Q |
301 |
gtctttgtccaccggacatccattgtccgtaaatcttaagctcgagaaaaaatatcggtaccattagaatgtaccatagtgattgatgtaggtttttggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364710 |
gtctttgtccaccggacatccattgtccgtaaatcttaagctcgagaaaaaatatcggtaccattagaatgtaccatagtgattgatgtaggtttttggt |
11364611 |
T |
|
| Q |
401 |
aacggatggaggaacgccgagtgctaaaaacaagagagctatccatggtgcaaagaagaagttaacacggatcggatggtagtactcacgacgaactgct |
500 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364610 |
aacggatggaggaactccgagtgctaaaaacaagagagctatccatggtgcaaagaagaagttaacacggatcggatggtagtactcacgacgaactgct |
11364511 |
T |
|
| Q |
501 |
tcaaagtagagaaggagtttgagaatatatacagcgaaaacggtagctataagtaccgtggagatgtaccataagattaagtttattttgggacttatgt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364510 |
tcaaagtagagaaggagtttgagaatatagacagcgaaaacagtagctataagtattgtggagatgtaccataagattaagtttattttgggacttatgt |
11364411 |
T |
|
| Q |
601 |
gaagaaactcggtcgaaggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggag |
700 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364410 |
gaagaaactcagtcgaaggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggag |
11364311 |
T |
|
| Q |
701 |
aagaaacggccattgtttgtcctgaggtagcattatctcttctgatgacttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaaca |
800 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364310 |
aagaaacggccattgtttgtcatgaggtagcattatctcttctgatgacttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaaca |
11364211 |
T |
|
| Q |
801 |
ggtaaaggcctatcaaagcttcttggagtgttgttaccatcttgtgtatttcctatcggttcttttccacgtagaatcgataat |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11364210 |
ggtaaaggcctatcaaagcttcttggagtgttgttaccatcttgtgtatttcctatcggttcttttccacgtagaatcgataat |
11364127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 750
Target Start/End: Complemental strand, 11342187 - 11341438
Alignment:
| Q |
1 |
caatgaagtaagcaattcttgatccataatcaaaggaaccttgcatcttagcccaagccattgaagcaacacttggtgctgcaacaaagagaaagaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
11342187 |
caatgaagtaagcaattcttgatccataatcaaaggaaccttgcatcttagcccaagccattgaagcaacactaggagctgcaacaaacagaaagaacac |
11342088 |
T |
|
| Q |
101 |
tggatgtagctctttaggtagggtctcatttgttggaagtcgttgataaagtgtcacaaataacacaatgtaatgagcaagtccaacagcaaagaagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11342087 |
tggatgtagctctttaggtagggttgcattagttggaagtctttgataaagtgtcacaaataacacagtgtaatgagcaagtccaacagcaaagaagaaa |
11341988 |
T |
|
| Q |
201 |
ataggtccttctactagtcccattgaagcaccaagtaatgctccgacaaaatttccaacaatcgataaatgattcgaagggtttgccacctttgaaagcc |
300 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11341987 |
ataggtccttcaattagtcccatcgatgcaccaagtaacgctccaacaaagtttccaacaactgataaatgattcgaagggttcgccaccttcgaaagcc |
11341888 |
T |
|
| Q |
301 |
gtctttgtccaccggacatccattgtccgtaaatcttaagctcgagaaaaaatatcggtaccattagaatgtaccatagtgattgatgtaggtttttggt |
400 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
11341887 |
gcctttgtccaccggacatccattgtccataaatctttagctcgagaaataatattggtgccataagaatgtaccatagagattgatgtaggtttttggt |
11341788 |
T |
|
| Q |
401 |
aacggatggaggaacgccgagtgctaaaaacaagagagctatccatggtgcaaagaagaagttaacacggatcggatggtagtactcacgacgaactgct |
500 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
11341787 |
aacggatggaggcacaccaagtgctaaaaacaagagagctatccatggtgcgaagaagaagttaacacggatcggatggtagtattcccgacgaactgct |
11341688 |
T |
|
| Q |
501 |
tcaaagtagagaaggagtttgagaatatatacagcgaaaacggtagctataagtaccgtggagatgtaccataagattaagtttattttgggacttatgt |
600 |
Q |
| |
|
|| ||||||| |||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
11341687 |
tcgaagtagaaaaggagtttgagaatatagactgcgaaaatggtagctataagtaccgcggagatgtaccataagattaggtttattttgggagttatgt |
11341588 |
T |
|
| Q |
601 |
gaagaaactcggtcgaaggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggag |
700 |
Q |
| |
|
|||| || || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11341587 |
gaaggaattcagtggtaggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggag |
11341488 |
T |
|
| Q |
701 |
aagaaacggccattgtttgtcctgaggtagcattatctcttctgatgact |
750 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11341487 |
aagaaacggccattgtttgtcatgaggtagcattatctcttctgatgact |
11341438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 749 - 884
Target Start/End: Complemental strand, 11341339 - 11341204
Alignment:
| Q |
749 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaaggcctatcaaagcttcttggagtgttgttaccatcttgtgta |
848 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
11341339 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaagccctatcaaagcttcttgtagcgttgttaccatcttgtgca |
11341240 |
T |
|
| Q |
849 |
tttcctatcggttcttttccacgtagaatcgataat |
884 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11341239 |
tttccaatcggttcttttccacgtagaatcgataat |
11341204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 749 - 843
Target Start/End: Complemental strand, 12635519 - 12635425
Alignment:
| Q |
749 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaaggcctatcaaagcttcttggagtgttgttaccatctt |
843 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||||||||| |||| ||||| | |||||| ||| |||| | | ||| ||||||||| |
|
|
| T |
12635519 |
cttaagagtttctaattctgggccttcaaatgtatcaaaatacctatgaacaagtaaattcatatcaatgctgcttgcaatattggtaccatctt |
12635425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: scaffold0549
Description:
Target: scaffold0549; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 750
Target Start/End: Complemental strand, 5376 - 4627
Alignment:
| Q |
1 |
caatgaagtaagcaattcttgatccataatcaaaggaaccttgcatcttagcccaagccattgaagcaacacttggtgctgcaacaaagagaaagaacac |
100 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
5376 |
caatgaaataagcaatccttgatccataatcaaatgaaccttgtatcttagcccaagccattgaagcaacactaggagctgcaacaaacagaaagaacac |
5277 |
T |
|
| Q |
101 |
tggatgtagctctttaggtagggtctcatttgttggaagtcgttgataaagtgtcacaaataacacaatgtaatgagcaagtccaacagcaaagaagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5276 |
tggatgtagctctttaggtagggttgcattagttggaagtctttgataaagtgtcacaaataacacagtgtaatgagcaagtccaacagcaaagaagaaa |
5177 |
T |
|
| Q |
201 |
ataggtccttctactagtcccattgaagcaccaagtaatgctccgacaaaatttccaacaatcgataaatgattcgaagggtttgccacctttgaaagcc |
300 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
5176 |
ataggtccttcaattagtcccatcgatgcaccaagtaacgctccaacaaagtttccaacaactgataaatgattcgaagggttcgccaccttcgaaagcc |
5077 |
T |
|
| Q |
301 |
gtctttgtccaccggacatccattgtccgtaaatcttaagctcgagaaaaaatatcggtaccattagaatgtaccatagtgattgatgtaggtttttggt |
400 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5076 |
gcctttgtccaccggacatccattgtccataaatctttagctcgagaaataatattggtgccataagaatgtaccatagagattgatgtaggtttttggt |
4977 |
T |
|
| Q |
401 |
aacggatggaggaacgccgagtgctaaaaacaagagagctatccatggtgcaaagaagaagttaacacggatcggatggtagtactcacgacgaactgct |
500 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4976 |
aacggatggaggcacaccaagtgctaaaaacaagagagctatccatggtgcgaagaagaagttaacacggatcggatggtagtattcccgacgaactgct |
4877 |
T |
|
| Q |
501 |
tcaaagtagagaaggagtttgagaatatatacagcgaaaacggtagctataagtaccgtggagatgtaccataagattaagtttattttgggacttatgt |
600 |
Q |
| |
|
|| ||||||| |||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4876 |
tcgaagtagaaaaggagtttgagaatatagactgcgaaaatggtagctataagtaccgcggagatgtaccataagattaggtttattttgggagttatgt |
4777 |
T |
|
| Q |
601 |
gaagaaactcggtcgaaggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggag |
700 |
Q |
| |
|
|||| || || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776 |
gaaggaattcagtggtaggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggag |
4677 |
T |
|
| Q |
701 |
aagaaacggccattgtttgtcctgaggtagcattatctcttctgatgact |
750 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4676 |
aagaaacggccattgtttgtcatgaggtagcattatctcttctgatgact |
4627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 617 - 750
Target Start/End: Complemental strand, 2670 - 2537
Alignment:
| Q |
617 |
aggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggagaagaaacggccattgt |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2670 |
aggtgatgtggctagggttttccaaagaattgcttggctgctaactccgaggcatataccgaatgatgaaacggggaaccggagaagaaacggccattgt |
2571 |
T |
|
| Q |
717 |
ttgtcctgaggtagcattatctcttctgatgact |
750 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
2570 |
ttgtcatgaggtagcattatctcttctgatgact |
2537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 749 - 884
Target Start/End: Complemental strand, 2438 - 2303
Alignment:
| Q |
749 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaaggcctatcaaagcttcttggagtgttgttaccatcttgtgta |
848 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
2438 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaagccctatcaaagcttcttgtagcgttgttaccatcttgtgca |
2339 |
T |
|
| Q |
849 |
tttcctatcggttcttttccacgtagaatcgataat |
884 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2338 |
tttccaatcggttcttttccacgtagaatcgataat |
2303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 749 - 884
Target Start/End: Complemental strand, 4528 - 4393
Alignment:
| Q |
749 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaaggcctatcaaagcttcttggagtgttgttaccatcttgtgta |
848 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
4528 |
cttaagagtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaagccctatcaaagcttcttgtagcgttgttaccatcttgtgca |
4429 |
T |
|
| Q |
849 |
tttcctatcggttcttttccacgtagaatcgataat |
884 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4428 |
tttccaatcggttcttttccacgtagaatcgataat |
4393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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