View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_30 (Length: 557)
Name: NF11930_low_30
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 10867689 - 10868041
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867689 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccaggcaactggcaactatagtagctggttcagtccttgcaggagagctct |
10867788 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgagttgtaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867789 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgagttgtaca |
10867888 |
T |
|
| Q |
217 |
tatgttatatgtagataccacaagtgcgagataaataatcttgtagttatcatcatgatcaatattcattgcttgtatttgttaattactttgttagttt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867889 |
tatgttatatgtagataccacaagtgcgagataaataatcttgtacttatcatcatgatcaatattcattgcttgtatttgttaattactttgttagttt |
10867988 |
T |
|
| Q |
317 |
tagttgtcattttacgattatttatgcatgcaagaagatgaataagttttact |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867989 |
tagttgtcattttacgattatttatgcatgcaagaagatgaataagttttact |
10868041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 10886680 - 10886328
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10886680 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccaggcaactggcaactatagtagctggttcagtccttgcaggagagctct |
10886581 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgagttgtaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10886580 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgagttgtaca |
10886481 |
T |
|
| Q |
217 |
tatgttatatgtagataccacaagtgcgagataaataatcttgtagttatcatcatgatcaatattcattgcttgtatttgttaattactttgttagttt |
316 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10886480 |
taggttatatgtagataccacaagtgcgagataaataatcttgtacttaccatcatgatcaatattcattgcttgtatttgttaattactttgttagttt |
10886381 |
T |
|
| Q |
317 |
tagttgtcattttacgattatttatgcatgcaagaagatgaataagttttact |
369 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10886380 |
tatttgtcattttacgattatttatgcatgcaagaagatgaataagttttact |
10886328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 10872623 - 10872431
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10872623 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccaggcaactggcaactatagtagctggttcagtccttgcaggagagctct |
10872524 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10872523 |
cactcatgtctgcaattgcagccgggcagcttgttaaaagccacatgaaatacaacagatcgaataaagatgtcaccaaagttgcttcatgag |
10872431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 10877694 - 10877502
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10877694 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccaggcaactggcaactatagtagctggttcagtccttgcaggagagctct |
10877595 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10877594 |
cactcatgtctgcaattgcagccgggcagcttgttaaaagccacatgaaatacaacagatcgaataaagatgtcaccaaagttgcttcatgag |
10877502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 10882765 - 10882573
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10882765 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccaggcaactggcaactatagtagctggttcagtccttgcaggagagctct |
10882666 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10882665 |
cactcatgtctgcaattgcagccgggcagcttgttaaaagccacatgaaatacaacagatcgaataaagatgtcaccaaagttgcttcatgag |
10882573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 39677383 - 39677575
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |||||||||||| || | | || |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39677383 |
aatttacttggagttaagggagctagtaaagagagtccaggagcaaactctaggcaattggcaactatagtagctggttcagtccttgcaggagagcttt |
39677482 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
209 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39677483 |
cactcatgtctgcaattgcagctggtcaacttgttaaaagccacatgaaatacaacagatctaataaagatgtcaccaaagttgcttcatgag |
39677575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 10048337 - 10048529
Alignment:
| Q |
17 |
aatttacttggtgttaaaggagctagtaaagagactccaggagcaaattccatgaaactggcaactatagtagctggttcagtccttgcaggagagctct |
116 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||||||||||||| | | || |||||||||| ||||| |||||||| ||||||||||| |||| |
|
|
| T |
10048337 |
aatttacttggtgttaagggtgctagtaaagaaactccaggagcaaattctaggcaattggcaactattgtagccggttcagttcttgcaggagaactct |
10048436 |
T |
|
| Q |
117 |
cactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatcaaataaagatgtcaccaaagttgcttcatgag |
209 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
10048437 |
cacttatgtctgcaattgcagctgggcagcttgtaaagagccacatgaaatacaatagatctagtaaagatgtcaccaaagttacttcatgag |
10048529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 375 - 487
Target Start/End: Original strand, 10868116 - 10868228
Alignment:
| Q |
375 |
caataaatatcaaaaagagttattttcaaaataataattaatgttctatttaaatttgaaatgatacaattatctcgatgtagaaattgaagtgtagaaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10868116 |
caataaatatcaaaaagagttattttcaaaataataattaatgttctatttaaatttgaaatgatacaattatctcgatgttgaaattgaagtgtagaaa |
10868215 |
T |
|
| Q |
475 |
tttttcataacca |
487 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10868216 |
tttttcataacca |
10868228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 10886253 - 10886141
Alignment:
| Q |
375 |
caataaatatcaaaaagagttattttcaaaataataattaatgttctatttaaatttgaaatgatacaattatctcgatgtagaaattgaagtgtagaaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886253 |
caataaatatcaaaaagagttattttcaaaataataattaacgttctatttaaatttgaaatgatacaattatctcgatgtagaaattgaagtgtagaaa |
10886154 |
T |
|
| Q |
475 |
tttttcataacca |
487 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10886153 |
tttttcataacca |
10886141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 488 - 547
Target Start/End: Complemental strand, 10886108 - 10886049
Alignment:
| Q |
488 |
tacttttcttagttacactttttgcgttcattgtatctatcattgtaacttgtatctctg |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886108 |
tacttttcttagttacactttttgcgttcattgtatctatcattgtaacttgtatctctg |
10886049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 547
Target Start/End: Original strand, 10868261 - 10868320
Alignment:
| Q |
488 |
tacttttcttagttacactttttgcgttcattgtatctatcattgtaacttgtatctctg |
547 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
10868261 |
tacttttcttctttacactttttgcgttcattgtatctatcattttaacttgtttctctg |
10868320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 37950688 - 37950744
Alignment:
| Q |
122 |
atgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatca |
178 |
Q |
| |
|
|||||||| ||||| | |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
37950688 |
atgtctgccattgcttcagggcaactagtcaaaagccacatgaaatacaacagatca |
37950744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 30707584 - 30707493
Alignment:
| Q |
86 |
gtagctggttcagtccttgcaggagagctctcactcatgtctgcaattgcagccgggcaacttgttaaaagccacatgaaatacaacagatc |
177 |
Q |
| |
|
||||||||||| || ||||| || ||||| ||||||||||||||||||||||| || ||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
30707584 |
gtagctggttcggtacttgccggcgagctatcactcatgtctgcaattgcagctggacaactagttaagagtcacatgaaatataacagatc |
30707493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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