View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_31 (Length: 556)
Name: NF11930_low_31
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 36896802 - 36897345
Alignment:
| Q |
1 |
agtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctaggt |
100 |
Q |
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| T |
36896802 |
agtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctaggt |
36896901 |
T |
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| Q |
101 |
ggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagtactnnnnnnnnnnnnnnnnnnnn |
200 |
Q |
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| T |
36896902 |
ggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagtactagcagcagcagcagaagcag |
36897001 |
T |
|
| Q |
201 |
nnntaagagctgtatcttcgaaatagattcgttggccaaatttcaagccattaagtgaggactcttctgaagaagagttgcctcctgaatccattggtgt |
300 |
Q |
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| T |
36897002 |
cagtaagagctgtatcttcgaaatagattcgttggccaaatttcaagccattaagtgaggactcttctgaagaagagttgcctcctgaatccattggtgt |
36897101 |
T |
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| Q |
301 |
gtaaggtttggtggtggttgctagattgtgctcattggtgagagataagtgaagtgtgagaatagtagtatnnnnnnntctgggga---gtggtggttgt |
397 |
Q |
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| T |
36897102 |
gtaaggtttggtggtggttgctagattgtgctcattggtgagagataagtgaagtgtgagaatagtagtatgggggggtctggggagtggtggtggttgt |
36897201 |
T |
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| Q |
398 |
tgttgtttggttaaagtgaaaacatttaaaaaagaagagtgaatgatagtggaaaagtgaagtggacaaaagaggaagaggtggaagggagaagtgagtt |
497 |
Q |
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| T |
36897202 |
tgttgtttggttaaagtgaaaacatttaaaaaagaagagtgaatggtagtggaaaagtgaagtggacaaaagaggaagaggtggaagggagaagtgagtt |
36897301 |
T |
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| Q |
498 |
gacactgctgggccatgtattgttggcaggaacccagttcagtg |
541 |
Q |
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| T |
36897302 |
gacactgctgggccatgtattgttggcaggaacccagttcagtg |
36897345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 22682233 - 22682327
Alignment:
| Q |
8 |
gatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctaggtgg |
102 |
Q |
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||||| || ||||||| ||||||||| ||||||||||| ||||| |||||| || ||||||||| |||||| ||||||||||||||||||||||| |
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| T |
22682233 |
gattttgaatgcatgcaacaaactttatgtctagaataataagccttagcaccactcagatctactttacaaccttcaacttgacacctaggtgg |
22682327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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