View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_32 (Length: 533)
Name: NF11930_low_32
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 518
Target Start/End: Original strand, 31777548 - 31778058
Alignment:
| Q |
7 |
atgagatggacatcacacgtgcaaaatttctcatatttgaaaaacatgttcacgctttaccattcttgtgtgaagagttgtagaaattgatgcaataatc |
106 |
Q |
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| T |
31777548 |
atgagatgtaaattacacgtgcaaaatttctcatatttgaaaaacatgttcacgctttaccattcttgtgtgaagagttgtagaaattgatgcaataatc |
31777647 |
T |
|
| Q |
107 |
ctcgtaagcacaatttgatcttgttactcccatatgtcctattcatcaatgctcttgttttgagctttattttcaaggtaggtaatataatgatctaaga |
206 |
Q |
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| T |
31777648 |
ctcgtaagcacaatttgatcttgttactcccatatgtcctattcatcaatgctcttgttttgagctttattttcaaggtaggtaatataatgatctaaga |
31777747 |
T |
|
| Q |
207 |
aatgtttgaacactcgggggtgagaatctgagtagacattttttattggctacttcatgctacctttagtagacatnnnnnnnnntgatcaacgatgttt |
306 |
Q |
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| T |
31777748 |
aatgtttgaacactcgggggtgagaatctgagtagacattttttattggctacttcatgctacctttagtagacat-aaaaaaaatgatcaacgatgttt |
31777846 |
T |
|
| Q |
307 |
gtcttttttaagaatgtcttgggagcaattcatggtacatatatgttatgtgtagttagcaccaacgagcaaatcaagtttattggaataaagggacatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31777847 |
gtcttttttaagaatgtcttgggagcaattcatggtacatatatgttatgtgtagttagcaccaacgagcaaatcaagtttattggaataaagggacatt |
31777946 |
T |
|
| Q |
407 |
ctacgtaaaaagataaagaagaagaaaatttacctcaaatcatctatattcggtagattaagaagaataaaagtggtgacagctaaagtttgagaatagg |
506 |
Q |
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| T |
31777947 |
ctacataaaaagataaagaagaagaaaatttacctcaaatcatccatattcggtagattaagaagaataaaagtggtgacagctaaagtttgagaatagg |
31778046 |
T |
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| Q |
507 |
gatggaatatgt |
518 |
Q |
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| T |
31778047 |
gatggaatatgt |
31778058 |
T |
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