View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_33 (Length: 528)
Name: NF11930_low_33
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 5 - 513
Target Start/End: Complemental strand, 51993227 - 51992716
Alignment:
| Q |
5 |
gagaagcaaagggagagcttttggagattgaagtaagtatatattggagcaataatttgtctacatttaggttagtcttcacatagaagggagtgaagca |
104 |
Q |
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| T |
51993227 |
gagaaacaatgggagagcttttggagattgaagtaagtat----tggagcaataatttgtctacatttaggttagtcttcacatagaagggagagaagca |
51993132 |
T |
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| Q |
105 |
catgaaactatgagaaaagactaaaattgaggggctgctataaagtgcatcctagtgttgttggctcgatgatattttcacggccatcatttgttccacc |
204 |
Q |
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| T |
51993131 |
catgaaactatgagaaaagactaaaattgaggggctgctataaagtgcatcctagtgttgttggctcgatgatattttcacggccatcatttgttccacc |
51993032 |
T |
|
| Q |
205 |
ttgctatcattccattgacatagagaaagaactcttcttgagt----catgtatgtcttctactctgctgaagtttggattctaaaatgtaaaatgtttt |
300 |
Q |
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| T |
51993031 |
ttgctatcattccattgacatagagaaagaactcttcttgagtcatgcatgtatgtcttctactctgctgaagtttgaattctaaaatgtaaaatgtttt |
51992932 |
T |
|
| Q |
301 |
gtttttcataatagtttccctcgttgat---tggtagatatgtttcatgttgaattttagatttattacattgtaagaagagatttattttagaactgac |
397 |
Q |
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| T |
51992931 |
gttttttataatagtttcccttgttgattgctggtagatatgtttcatgttgaattttagatttattacattgtaagaagagatttattttagaactgac |
51992832 |
T |
|
| Q |
398 |
atggtacttttcagggtagtacactgtacacctatgatcttcatatttccagattcacggatgctttcgtttttgttttactttagatttaatttagagt |
497 |
Q |
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| T |
51992831 |
atggtacttttcagggtagtacactgtacacctatgatcttcatatttccagattcacggatgctttcgtttttgttttattttagatttaatttagagt |
51992732 |
T |
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| Q |
498 |
attcctttgaaactat |
513 |
Q |
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| T |
51992731 |
attcctttgaaactat |
51992716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 8187284 - 8187344
Alignment:
| Q |
132 |
tgaggggctgctataaagtgcatcctagtgttgttggctcgatgatattttcacggccatc |
192 |
Q |
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| T |
8187284 |
tgaggcgctgctataatgtgcatcctgatgttgttgactcgatgatattttcaaggccatc |
8187344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 55505310 - 55505361
Alignment:
| Q |
144 |
ataaagtgcatcctagtgttgttggctcgatgatattttcacggccatcatt |
195 |
Q |
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| T |
55505310 |
ataaagtgcatactagtgttgttgactcaatggtattttcaaggccatcatt |
55505361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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