View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_34 (Length: 514)
Name: NF11930_low_34
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_34 |
 | |
|
| [»] scaffold1961 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 17702735 - 17702236
Alignment:
| Q |
1 |
agttttattaggccactcatgaaattttttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattatggtcctaaccttgatttact |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17702735 |
agttttattaggacactcatgaaattttttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattattgtcctaaccttgatttact |
17702636 |
T |
|
| Q |
101 |
atctcacacaatctgaaataatgaatcattttggcatataagatgatcttgctagctatataaacatttccctatggt----tatgtgcatatcaaatgg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
17702635 |
atctcacacaatctgaaataatgaatcattttggcatataagatgatcttgccagctatataaacattttcctatggtacgttatgtgcatatcaaatgg |
17702536 |
T |
|
| Q |
197 |
atgttgtatttannnnnnnactttccatcattgcataaggacaaattttatctttctaatatttgattgtctttattttgtggatacagacatgcttatt |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17702535 |
atgttgtatttatttttttactttccatcattgcatagcgacaaattttatgtttctaatatttcattgtctttattttgtggatacagacatgcttatt |
17702436 |
T |
|
| Q |
297 |
atatggttcttcacaattttggtgagaagctatactccaagctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctga |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17702435 |
atatggttcttcacaattttggtgagaagctatactctaagctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctga |
17702336 |
T |
|
| Q |
397 |
aggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17702335 |
aggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggcattagaaatgattagagacattctgatgtacatggacaggacttat |
17702236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 249 - 496
Target Start/End: Complemental strand, 17691325 - 17691078
Alignment:
| Q |
249 |
tttctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctac |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || |
|
|
| T |
17691325 |
tttctaatatttcattgtctttattttgtggattcagacatgcttattatatggttctttacaattttggtgagaagctatactctgggctagttgccac |
17691226 |
T |
|
| Q |
349 |
catgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataag |
448 |
Q |
| |
|
||||||||||||| || |||||||||| | |||| |||||||| || ||| |||||||||| | |||||||| ||||| || |||||||||||||||||| |
|
|
| T |
17691225 |
catgacttctcatctccaagagatagctagatctcttgaagccactcaagtaagttcctttatggaagaattgaacacaaagtggaatgattattataag |
17691126 |
T |
|
| Q |
449 |
gcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
| ||| | | |||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
17691125 |
tcgttaccatttcttagcgacattctgaggtacatggaaaggacttat |
17691078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 249 - 496
Target Start/End: Complemental strand, 17684399 - 17684152
Alignment:
| Q |
249 |
tttctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctac |
348 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || |
|
|
| T |
17684399 |
tttctaatgttttattgtctttactttgtggattcagacatgcttattatatggttctttacaattttggtgagaagctatactctgggctagttgccac |
17684300 |
T |
|
| Q |
349 |
catgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataag |
448 |
Q |
| |
|
||||||||||||| ||| ||||||||| | |||| |||||||| || |||||| ||| || || |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
17684299 |
catgacttctcatctcagagagatagctagatctcttgaagccactcaaggaatttcgttcctggaagaatttaacacgaaatggaatgattataataag |
17684200 |
T |
|
| Q |
449 |
gcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
| |||| | | |||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
17684199 |
tcgttagcatttcttagggacattctgaggtacatggaaaggacttat |
17684152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 251 - 496
Target Start/End: Original strand, 17569978 - 17570223
Alignment:
| Q |
251 |
tctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctacca |
350 |
Q |
| |
|
|||||||| | |||||||||| |||||| || || ||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
17569978 |
tctaatatattattgtctttaatttgtgcatttaggaatgcttacaatatggttgttcacaaatttggtgagaagctatactctgggctggttgcaacca |
17570077 |
T |
|
| Q |
351 |
tgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggc |
450 |
Q |
| |
|
||||||||| ||||||||||||| | |||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
17570078 |
caacttctcatctcaaagagatagctagatctcttgaagccactgaaggaagttcctttctggaagaattaaacagaaaatggaatgatcataataaggc |
17570177 |
T |
|
| Q |
451 |
attagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||| | ||||||| |
|
|
| T |
17570178 |
attacgaatgattaatgacattctgatgtacgtggataagacttat |
17570223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 263 - 496
Target Start/End: Original strand, 17562894 - 17563127
Alignment:
| Q |
263 |
ttgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctaccatgacttctcatg |
362 |
Q |
| |
|
||||||||||||||| ||| || ||||||| |||||||||||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
17562894 |
ttgtctttattttgttgatttaggaatgcttacaatatggttcttcacaaatttggcgagaggctatactctgggctggttgccaccatgacttctcatc |
17562993 |
T |
|
| Q |
363 |
tcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggcattagaaatgat |
462 |
Q |
| |
|
|| ||||||| || | ||||||||||||| || |||||||||||||||| | ||||||||||| | ||| | ||| | ||||||||||| ||||||| |
|
|
| T |
17562994 |
tccaagagatggctagatctgttgaagccactcaaggaagttcctttctggtagaattaaacagaatgtgggaagatcacaataaggcattacaaatgat |
17563093 |
T |
|
| Q |
463 |
tagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17563094 |
tagagacattctgatgtacatggacaggacttat |
17563127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 17684483 - 17684441
Alignment:
| Q |
32 |
catgaaatttgagttaaaatgctacaagctgtgattggacatt |
74 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17684483 |
catgaaatttgagttaaaatgttacaagctgtgattggacatt |
17684441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 15883463 - 15883415
Alignment:
| Q |
238 |
caaattttatctttctaatatttgattgtctttattttgtggatacaga |
286 |
Q |
| |
|
||||||| || |||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
15883463 |
caaatttcatgtttctaatattttattgtctctattttgtggattcaga |
15883415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Original strand, 14626763 - 14627257
Alignment:
| Q |
2 |
gttttattaggccactcatgaaattttttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattatggtcctaaccttgatttacta |
101 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14626763 |
gttttattaggacactcatgaaatattttacatgaaatttgagttaaaatgctacaagctgtgattggacattcattattgtcctaaccttgatttacta |
14626862 |
T |
|
| Q |
102 |
tctcacacaatctgaaataatgaatcattttggcatataagatgatcttgctagctatataaacatttccctatggttatgtgcatatcaaatggatgtt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14626863 |
tctcacacaatctgaaataatgaatcattttggcatataagatgatcttgctagctatataaacattttcctatggttatgtgcatatcaaatggatgtt |
14626962 |
T |
|
| Q |
202 |
gtatttannnnnnnactttccatcattgcataaggacaaattttatctttctaatatttgattgtctttattttgtggatacagacatgcttattatatg |
301 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14626963 |
gtatttatttttttccattccatcattgcatagagacaaattttatgtttctaatattttattgtctttattttgttgatacagacatgcttattatatg |
14627062 |
T |
|
| Q |
302 |
gttcttcacaattttggtgagaagctatactccaagctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14627063 |
gttcttcacaattttggtgagaagctatactctaagctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaa |
14627162 |
T |
|
| Q |
402 |
gttcctttcttgaagaattaaacacgaaatggaatgattattataaggcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14627163 |
gttcctttcttgaagaattaaacacgaaatggaatgattattataaggcattagaaattattagagacattctgatgtacatggacaggacttat |
14627257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 249 - 496
Target Start/End: Original strand, 14652427 - 14652674
Alignment:
| Q |
249 |
tttctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctac |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
14652427 |
tttctaatattttattgtctttattttgtggattcagacatgcttattatatggttcttcacaattttggtgacaagctatactctgggctagttgccac |
14652526 |
T |
|
| Q |
349 |
catgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataag |
448 |
Q |
| |
|
||||||||||||| || |||||||||| | |||| |||||||| || |||||||||||||| | |||||||| ||||| || |||||||||||||||||| |
|
|
| T |
14652527 |
catgacttctcatctccaagagatagctagatctcttgaagccactcaaggaagttcctttatggaagaattgaacacaaagtggaatgattattataag |
14652626 |
T |
|
| Q |
449 |
gcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
| ||| | | |||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
14652627 |
tcgttaccatttcttagcgacattctgaggtacatggaaaggacttat |
14652674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 251 - 478
Target Start/End: Complemental strand, 14750635 - 14750408
Alignment:
| Q |
251 |
tctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctacca |
350 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||||||| ||||| |||||||| | |||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
14750635 |
tctaatattttattgtctttattttgtggattcagaaatgcttacaatatgattcttcaccaatttggtgataagctatactctgggctggttgccacca |
14750536 |
T |
|
| Q |
351 |
tgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggc |
450 |
Q |
| |
|
||||||||||| | |||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| || || |||| |
|
|
| T |
14750535 |
tgacttctcatctgaaagagatggcaagatctgttgcagccactgaaggaagttcctttcttgaagaattaaacacaaaatggaatgatcataatgaggc |
14750436 |
T |
|
| Q |
451 |
attagaaatgattagagacattctgatg |
478 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
14750435 |
attacgaatgattagagacattttgatg |
14750408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 249 - 496
Target Start/End: Original strand, 14660862 - 14661109
Alignment:
| Q |
249 |
tttctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctac |
348 |
Q |
| |
|
|||||||||||| ||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| | || |
|
|
| T |
14660862 |
tttctaatattttgttgtctttaatttgtgtattcagacatgcttattatatggttctttacaattttggtgagaagctatactctgggctagttaccac |
14660961 |
T |
|
| Q |
349 |
catgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataag |
448 |
Q |
| |
|
||||||||||||| ||| ||||||||| | |||| |||||| | || |||||| ||| || || |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
14660962 |
catgacttctcatctcagagagatagctagatctcttgaagacactcaaggaatttcgttcctggaagaatttaacacgaaatggaatgattataataag |
14661061 |
T |
|
| Q |
449 |
gcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
| |||| | | |||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
14661062 |
tcgttagcatttcttagggacattctgaggtacatggaaaggacttat |
14661109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 251 - 486
Target Start/End: Complemental strand, 14758557 - 14758322
Alignment:
| Q |
251 |
tctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctacca |
350 |
Q |
| |
|
|||||||| | |||||||||| |||||| || || ||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
14758557 |
tctaatatattattgtctttaatttgtgcatttaggaatgcttacaatatggttgttcacaaatttggtgagaagctatactctgggctggttgcaacca |
14758458 |
T |
|
| Q |
351 |
tgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggc |
450 |
Q |
| |
|
||||||||| ||||||||||||| | |||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
14758457 |
caacttctcatctcaaagagatagctagatctcttgaagccactgaaggaagttcctttctggaagaattaaacagaaaatggaatgatcataataaggc |
14758358 |
T |
|
| Q |
451 |
attagaaatgattagagacattctgatgtacatgga |
486 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||| |
|
|
| T |
14758357 |
attacgaatgattaatgacattctgatgtacgtgga |
14758322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 263 - 496
Target Start/End: Complemental strand, 14765705 - 14765472
Alignment:
| Q |
263 |
ttgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaagctggttgctaccatgacttctcatg |
362 |
Q |
| |
|
||||||||||||||| ||| || ||||||| |||||||||||||||| |||||||||| |||| |||| ||||||||| ||| ||||||||||| |
|
|
| T |
14765705 |
ttgtctttattttgttgatttaggaatgcttacaatatggttcttcacaaatttggtgagaggctagactctgggctggttgccaccgtgacttctcatc |
14765606 |
T |
|
| Q |
363 |
tcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatgattattataaggcattagaaatgat |
462 |
Q |
| |
|
|| ||||||| || | ||||||||||||| || |||||||||||||||| | ||||||||||| | ||| | ||| | ||||||||||| ||||||| |
|
|
| T |
14765605 |
tccaagagatggctagatctgttgaagccactcaaggaagttcctttctggtagaattaaacagaatgtgggaagatcacaataaggcattacaaatgat |
14765506 |
T |
|
| Q |
463 |
tagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
14765505 |
tagagacattctgatgtacatggacaggacttat |
14765472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 237 - 496
Target Start/End: Complemental strand, 15196828 - 15196569
Alignment:
| Q |
237 |
acaaattttatctttctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaa |
336 |
Q |
| |
|
|||||||| || |||||||||||| || |||| |||||||||||| |||| |||||| ||||| || ||||| |||||| |||||||||||||| |
|
|
| T |
15196828 |
acaaatttcatgtttctaatattttatcgtctatattttgtggattcagaaatgcttgcaatatgatttttcacggttttggggagaagctatactctgg |
15196729 |
T |
|
| Q |
337 |
gctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaat |
436 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||| || | |||||||| |||| || | |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
15196728 |
actggttgccatcatgacttctcagctcaaagagatggctacatctgttgcagccactcgaacaagttcctttctgaaagaattaaacagaaaatggaat |
15196629 |
T |
|
| Q |
437 |
gattattataaggcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
||| | ||||||||| || ||||||||||||| | ||||||||||| | ||||||| |
|
|
| T |
15196628 |
gatcacagcaaggcattacgaaagattagagacattttaatgtacatggatacgacttat |
15196569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 237 - 496
Target Start/End: Complemental strand, 15217246 - 15216987
Alignment:
| Q |
237 |
acaaattttatctttctaatatttgattgtctttattttgtggatacagacatgcttattatatggttcttcacaattttggtgagaagctatactccaa |
336 |
Q |
| |
|
|||||||| || |||||||||||| || |||| |||||||||||| |||| |||||| ||||| || ||||| |||||| |||||||||||||| |
|
|
| T |
15217246 |
acaaatttcatgtttctaatattttatcgtctatattttgtggattcagaaatgcttgcaatatgatttttcacggttttggggagaagctatactctgg |
15217147 |
T |
|
| Q |
337 |
gctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaat |
436 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||| || | |||||||| |||| || | |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
15217146 |
actggttgccatcatgacttctcagctcaaagagatggctacatctgttgcagccactcgaacaagttcctttctgaaagaattaaacagaaaatggaat |
15217047 |
T |
|
| Q |
437 |
gattattataaggcattagaaatgattagagacattctgatgtacatggacaggacttat |
496 |
Q |
| |
|
||| | ||||||||| || ||||||||||||| | ||||||||||| | ||||||| |
|
|
| T |
15217046 |
gatcacagcaaggcattacgaaagattagagacattttaatgtacatggatacgacttat |
15216987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 472
Target Start/End: Complemental strand, 447 - 288
Alignment:
| Q |
313 |
ttttggtgagaagctatactccaagctggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttctt |
412 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||| |||||||||| || | |||||||| |||| || || ||||||||||||| |
|
|
| T |
447 |
ttttggggagaagctatactctggactggttgccaccataacttctcagctcaaagagatggctacatctgttgcagccactcaaagaagttcctttctg |
348 |
T |
|
| Q |
413 |
gaagaattaaacacgaaatggaatgattattataaggcattagaaatgattagagacatt |
472 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
347 |
aaagaattaaacagaaaatggaatgatcacagaaaggcattacgaatgattagagacatt |
288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 489
Target Start/End: Complemental strand, 24396049 - 24395899
Alignment:
| Q |
339 |
tggttgctaccatgacttctcatgtcaaagagatagccaaatctgttgaagcctctgaaggaagttcctttcttgaagaattaaacacgaaatggaatga |
438 |
Q |
| |
|
||||||| ||||||||| | ||| ||||||| ||||| |||||| ||||||| || ||||| | || ||||| |||||| | |||| |||||||||||| |
|
|
| T |
24396049 |
tggttgcgaccatgactgcacatctcaaagaaatagctaaatctattgaagcagctcaaggagggtcttttctggaagaactgaacaggaaatggaatga |
24395950 |
T |
|
| Q |
439 |
ttattataaggcattagaaatgattagagacattctgatgtacatggacag |
489 |
Q |
| |
|
| || | || ||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
24395949 |
tcataacaaagcattgcaaatgattagagatatactgatgtacatggacag |
24395899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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