View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_36 (Length: 482)
Name: NF11930_low_36
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 43633817 - 43634288
Alignment:
| Q |
1 |
agatagactttagatcacgagattctgtagccacttaccaacatgggaagacattgaaaagaaaatgcaaattatatcgtgtttcgttgagattgaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633817 |
agatagactttagatcacgagattctgtagccacttaagaacatgggaagacattgaaaagaaaatgcaaattatatcgtgtttcgttgagattgaacac |
43633916 |
T |
|
| Q |
101 |
tttgtattagtgatccgttttttattccaacgttaggagacattgggaaagaaaataagaaagtttatctcaagtaatttgaaatttccaagagtttaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633917 |
tttgtattagtgatccgttttttattccaactttaggagacattggaaaagaaaataagaaagtttatctcaagtaatttgaaatttccaagagtttaga |
43634016 |
T |
|
| Q |
201 |
attataaacaattgaattgacgcagtgaataaactacaccaaaagataaattttttgagaaaatctaaatttg--ttttttgagtctgaacaatttttag |
298 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
43634017 |
attatatacaattgaattgacg-agtgaataaactccaccaaaagataaattctttgagtaaatctaaatttgttttttttgagtttgaacaatttttag |
43634115 |
T |
|
| Q |
299 |
gttaaaacacgtatctaacagtgttcgttctttatctcttatcatcatctacttttcatatccatcattactctatcttagaagaatcgtatgaaaaaat |
398 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43634116 |
attaaaatatgtatctaacactgttcgttctttatctcttatcatcatctacttttcatatccatcattattctatcttagaagaatcgtatgaaaaaat |
43634215 |
T |
|
| Q |
399 |
ataagtttgattcctgagtatgaacaatttttatgttgaaaca------cacatctaacatccttcgatctct |
465 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43634216 |
ataagtttgacttctaagtatgaacaatttttatgttgaaacacacatgcacatctaacatccttcgatctct |
43634288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University