View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_38 (Length: 479)

Name: NF11930_low_38
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_38
NF11930_low_38
[»] chr7 (13 HSPs)
chr7 (1-213)||(44541228-44541440)
chr7 (245-472)||(44540997-44541225)
chr7 (330-472)||(42607090-42607233)
chr7 (329-472)||(6729407-6729551)
chr7 (378-472)||(40257747-40257841)
chr7 (340-472)||(6730064-6730196)
chr7 (365-465)||(40257596-40257696)
chr7 (188-315)||(36906051-36906179)
chr7 (350-465)||(7677726-7677841)
chr7 (366-472)||(42607746-42607851)
chr7 (435-472)||(24996685-24996722)
chr7 (439-472)||(40320416-40320449)
chr7 (435-467)||(4261598-4261630)
[»] chr8 (5 HSPs)
chr8 (329-472)||(35943734-35943878)
chr8 (340-472)||(35943085-35943218)
chr8 (350-465)||(5035193-5035308)
chr8 (365-465)||(34992195-34992296)
chr8 (435-472)||(42345403-42345440)
[»] chr1 (9 HSPs)
chr1 (340-455)||(45922258-45922375)
chr1 (340-454)||(45923037-45923152)
chr1 (376-465)||(49611502-49611592)
chr1 (349-465)||(6075990-6076106)
chr1 (379-467)||(9948833-9948921)
chr1 (425-472)||(2687719-2687766)
chr1 (402-463)||(47334217-47334278)
chr1 (377-465)||(11032163-11032251)
chr1 (365-464)||(50827022-50827121)
[»] chr6 (5 HSPs)
chr6 (377-472)||(25067794-25067889)
chr6 (380-472)||(25067144-25067236)
chr6 (376-456)||(930948-931030)
chr6 (410-465)||(3542830-3542885)
chr6 (376-451)||(10608262-10608338)
[»] scaffold0041 (1 HSPs)
scaffold0041 (350-465)||(27237-27352)
[»] chr5 (6 HSPs)
chr5 (1-67)||(472715-472781)
chr5 (350-465)||(33001948-33002063)
chr5 (410-472)||(4789529-4789591)
chr5 (351-472)||(42650766-42650886)
chr5 (402-465)||(6803964-6804027)
chr5 (435-472)||(1970516-1970553)
[»] chr3 (8 HSPs)
chr3 (365-472)||(49161740-49161847)
chr3 (410-465)||(36750414-36750469)
chr3 (410-465)||(41755515-41755570)
chr3 (410-467)||(41756409-41756466)
chr3 (435-472)||(43768035-43768072)
chr3 (412-465)||(45297565-45297618)
chr3 (412-472)||(33968190-33968250)
chr3 (350-465)||(36750061-36750177)
[»] chr4 (13 HSPs)
chr4 (388-465)||(34371478-34371555)
chr4 (390-464)||(23383327-23383401)
chr4 (376-456)||(25655581-25655662)
chr4 (376-465)||(11680292-11680382)
chr4 (376-465)||(11688571-11688661)
chr4 (402-472)||(25970115-25970184)
chr4 (435-465)||(30808637-30808667)
chr4 (435-472)||(39429939-39429976)
chr4 (376-456)||(46764277-46764358)
chr4 (435-472)||(47326791-47326828)
chr4 (435-472)||(47341587-47341624)
chr4 (435-472)||(55514356-55514393)
chr4 (435-467)||(10425061-10425093)
[»] scaffold0311 (1 HSPs)
scaffold0311 (410-465)||(137-192)
[»] chr2 (3 HSPs)
chr2 (413-472)||(15602800-15602859)
chr2 (415-472)||(34617662-34617719)
chr2 (365-465)||(4479634-4479734)
[»] scaffold0155 (1 HSPs)
scaffold0155 (377-451)||(17369-17444)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44541440 - 44541228
Alignment:
Q  1 tctaaattgaccattgattttagtttgtgttccttaatgaaactcacagtttttaatttataggaaatcccatgctattttggattttgaattactctga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  44541440 tctaaattgaccattgattttagtttgtgttccttaatgaaactcacagtttttaatttataggaaatcccatgctattttggattttgaatttctctgg 44541341  T
Q  101 atattatttcgaatcttgtattttttagaggtataatctcacacttttatcatgtatttccttcaatctcacaaatcttgtatctggatattggatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541340 atattatttcgaatcttgtattttttagaggtataatctcacacttttatcatgtatttccttcaatctcacaaatcttgtatctggatattggatttcc 44541241  T
Q  201 catgctttaattt 213  Q
    |||||||||||||    
T  44541240 catgctttaattt 44541228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 245 - 472
Target Start/End: Complemental strand, 44541225 - 44540997
Alignment:
Q  245 taaggacgtatatagaaggtgcaacgaggtggtgagggcaaa-agggagatgggttgtggagggtgtgttgtcgtagaagaatagaatggtggagtgaga 343  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  44541225 taaggacgtatatagaaggtgcaacgaggtggtgagggcaaagagggagatgggttgtggaggatgtgttgtcgtggaagaatagaatggtggagtgaga 44541126  T
Q  344 attgtagtggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatg 443  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  44541125 attgtagtggaagataaagtgaaaaataattaagtgttgataggccatgataagattgtgtttcttatttgatctaatgaataaaaacaattttttcatg 44541026  T
Q  444 gtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||| ||||||    
T  44541025 gtgggaaacaactctcctttcccatgcta 44540997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 330 - 472
Target Start/End: Complemental strand, 42607233 - 42607090
Alignment:
Q  330 atggtggagtgagaattgtagtggaagataaagtgaaaaa-taattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaa 428  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  42607233 atggtggagagagaatggtagtggaagataaagtgaaaaaataatcaagtgttgatagatcatgataagattgtgtttctcatttgatctaatggacaaa 42607134  T
Q  429 aacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||| |||||||||||||||||||| || ||||||| ||||||    
T  42607133 aacaactttcccatggtgggaaacaattcccctttcccatgcta 42607090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 329 - 472
Target Start/End: Complemental strand, 6729551 - 6729407
Alignment:
Q  329 aatggtggagtgagaattgtagtggaagataaagtgaaaaa-taattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaa 427  Q
    |||||||||| |||||||||| || |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||| || | ||||    
T  6729551 aatggtggagagagaattgtactgaaagataaagtaaaaaaataattaagtgttgataaaccatgataagattgtgtttctcatttgatccaagggacaa 6729452  T
Q  428 aaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
     || || |||||||| |||| |||||| |||||||||| ||||||    
T  6729451 gaaaaactttcccatagtggaaaacaattctcctttcccatgcta 6729407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 378 - 472
Target Start/End: Original strand, 40257747 - 40257841
Alignment:
Q  378 tgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||| | ||||| ||||||    
T  40257747 tgttgatagatcatgataagaatgtgtttctcatttgatctaatggacaaaaacaactttctcatggtgggaaacaactcccatttcccatgcta 40257841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 472
Target Start/End: Original strand, 6730064 - 6730196
Alignment:
Q  340 gagaattgtagtggaagataaagtgaaaaa-taattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttc 438  Q
    |||| ||| |||| |||| ||||||||||| |||| || |||| |||||||||||||||||||||||||| |||||||| |||| ||||||| || || |    
T  6730064 gagagttggagtgaaagacaaagtgaaaaaataatcaaatgtttatagaccatgataagattgtgtttctcatttgatccaatggacaaaaa-aaattcc 6730162  T
Q  439 ccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||||||||||||||  ||||||| ||||||    
T  6730163 ccatggtgggaaacaacttccctttcccatgcta 6730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 40257696 - 40257596
Alignment:
Q  365 aaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttc 464  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||| || ||| ||||||| | ||||||||||| ||||    
T  40257696 aaaaataatcaagtgttgatagatcatgataagaatgtgtttctcatttgatctaatggacaaaaataacttttccatggtcgaaaacaactctcatttc 40257597  T
Q  465 c 465  Q
    |    
T  40257596 c 40257596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 36906051 - 36906179
Alignment:
Q  188 atattggatttcccatgctttaatttagcatacaaaattttgatgaagaaattccaataaggacgtatatagaa-ggtgcaacgaggtggtgagggcaaa 286  Q
    ||||||||||||||||| |  || || |||||||||| ||||||| ||||||||||||||||| | |   |||| ||||||| ||||||||| ||  ||     
T  36906051 atattggatttcccatgttaaaaattcgcatacaaaagtttgatgtagaaattccaataaggatgcagtgagaaaggtgcaatgaggtggtggggtaaag 36906150  T
Q  287 agggagatgggttgtggagggtgtgttgt 315  Q
    |||||||||||||||||||||||||||||    
T  36906151 agggagatgggttgtggagggtgtgttgt 36906179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 465
Target Start/End: Original strand, 7677726 - 7677841
Alignment:
Q  350 gtggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtggga 449  Q
    ||||||||||  || |||||||||| |||||||| |||  ||||||||| |||||| || |||| ||||||||||||  | ||| |||||||||||||||    
T  7677726 gtggaagatattgtaaaaaataatttagtgttgagagaatatgataagaatgtgttcctcatttaatctaatgaacatgatcaactttcccatggtggga 7677825  T
Q  450 aacaactctcctttcc 465  Q
    || |||||||||||||    
T  7677826 aagaactctcctttcc 7677841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 472
Target Start/End: Original strand, 42607746 - 42607851
Alignment:
Q  366 aaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||||||| |||||||||||||  ||||||||||||||||||| |||||||| |||| ||||||| || ||||| ||| |||||||||| || ||||| |    
T  42607746 aaaataatcaagtgttgatagattatgataagattgtgtttctcatttgatc-aatggacaaaaataactttcctatgatgggaaacaattccccttttc 42607844  T
Q  466 tatgcta 472  Q
     ||||||    
T  42607845 catgcta 42607851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 24996685 - 24996722
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  24996685 tttcccatggtgggaaacaactcccctttcccatgcta 24996722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 40320416 - 40320449
Alignment:
Q  439 ccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||||||||||||||||||||||| ||||||    
T  40320416 ccatggtgggaaacaactctcctttcccatgcta 40320449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 4261598 - 4261630
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttccta 467  Q
    ||||||||||||||||| |||||||||||||||    
T  4261598 tttcccatggtgggaaagaactctcctttccta 4261630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 329 - 472
Target Start/End: Original strand, 35943734 - 35943878
Alignment:
Q  329 aatggtggagtgagaattgtagtggaagataaagtgaaaa-ataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaa 427  Q
    |||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||| || | ||||    
T  35943734 aatggtggagagagaattgtagtgaaagataaagtaaaaaaataattaagtgttgataaaccatgataagattgtgtttctcatttgatccaagggacaa 35943833  T
Q  428 aaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
     || || ||| |||| ||||||||||| |||||||||| ||||||    
T  35943834 gaaaaacttttccatagtgggaaacaattctcctttcccatgcta 35943878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 340 - 472
Target Start/End: Complemental strand, 35943218 - 35943085
Alignment:
Q  340 gagaattgtagtggaagataaagtgaaaaa-taattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttc 438  Q
    |||| ||| |||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||  |||| ||||||| || || |    
T  35943218 gagagttggagtgaaagacaaagtgaaaaaataatcaagtgttgatagaccatgataagattgtgtttctcatttgattcaatggacaaaaaaaacttcc 35943119  T
Q  439 ccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||||||||||||||  ||||||| ||||||    
T  35943118 ccatggtgggaaacaacttccctttcccatgcta 35943085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 465
Target Start/End: Original strand, 5035193 - 5035308
Alignment:
Q  350 gtggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtggga 449  Q
    ||||||||||  || ||| |||||| |||||||| |||  ||||||||| ||| || || |||| |||||||| |||  | ||| ||||| ||||||| |    
T  5035193 gtggaagatagtgtaaaacataatttagtgttgagagagtatgataagaatgtattcctcatttaatctaatggacatgatcaactttcctatggtggaa 5035292  T
Q  450 aacaactctcctttcc 465  Q
    || |||||||||||||    
T  5035293 aagaactctcctttcc 5035308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 465
Target Start/End: Original strand, 34992195 - 34992296
Alignment:
Q  365 aaaaataattaagtg-ttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctccttt 463  Q
    |||||||||| |||| |||| |||  |||||| || | |||| || |||| |||||||| |||  | ||| ||||||||||||||||| |||||||||||    
T  34992195 aaaaataatttagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaactctccttt 34992294  T
Q  464 cc 465  Q
    ||    
T  34992295 cc 34992296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 42345440 - 42345403
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  42345440 tttcccatggtgggaaacaactctccattcccatgcta 42345403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 340 - 455
Target Start/End: Complemental strand, 45922375 - 45922258
Alignment:
Q  340 gagaattgtagtggaagataaagtgaaaaa-taattaagtgttgatagaccatgataagattgtgtttcttatttgatctaat-gaacaaaaacaatttt 437  Q
    |||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||| || |||    
T  45922375 gagaattgtagtggaagacaaattgaaaaaataatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatagacaaaaaaaaacttt 45922276  T
Q  438 cccatggtgggaaacaac 455  Q
    ||||||||||||||||||    
T  45922275 cccatggtgggaaacaac 45922258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 340 - 454
Target Start/End: Original strand, 45923037 - 45923152
Alignment:
Q  340 gagaattgtagtggaagataaagtgaaaaa-taattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttc 438  Q
    ||||| |||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||     
T  45923037 gagaaatgtagtggaagataaagcaaaaaaataatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggacaaaaaaaactttt 45923136  T
Q  439 ccatggtgggaaacaa 454  Q
    ||||||||| ||||||    
T  45923137 ccatggtggaaaacaa 45923152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 465
Target Start/End: Original strand, 49611502 - 49611592
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaacaactctcctttcc 465  Q
    |||||||| |||||||| ||| |||||||| | ||||| ||||||||  ||||||| |||||||||||| ||||||| ||||  |||||||    
T  49611502 agtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaactagcctttcc 49611592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 465
Target Start/End: Complemental strand, 6076106 - 6075990
Alignment:
Q  349 agtggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtggg 448  Q
    |||||||||||  || |||||||||| |||||||| |||| ||||||| | ||| || || |||| |||||||| |||  | ||| |||| |||||| |     
T  6076106 agtggaagatagtgtaaaaaataatttagtgttgagagactatgataaaaatgtattcctcatttaatctaatggacatgatcaactttctcatggtaga 6076007  T
Q  449 aaacaactctcctttcc 465  Q
    ||| |||||||||||||    
T  6076006 aaagaactctcctttcc 6075990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 9948833 - 9948921
Alignment:
Q  379 gttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttccta 467  Q
    |||||||||  |||||| || | |||| || |||| |||||||| |||  | ||| ||||||||||||||||| |||||||||||||||    
T  9948833 gttgatagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttccta 9948921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 472
Target Start/End: Original strand, 2687719 - 2687766
Alignment:
Q  425 caaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||| ||||||||||||||||||||||| | |||||||| ||||||    
T  2687719 caaaaataattttcccatggtgggaaacaattatcctttcccatgcta 2687766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 47334278 - 47334217
Alignment:
Q  402 tgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctccttt 463  Q
    ||||||| |||| |||||||| ||| || ||| |||||||| |||||||||||||| |||||    
T  47334278 tgtttctcatttaatctaatggacataatcaactttcccattgtgggaaacaactccccttt 47334217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 465
Target Start/End: Original strand, 11032163 - 11032251
Alignment:
Q  377 gtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    ||||||| || ||||||||||| ||||||  ||| || ||||||||  ||||  ||| |||||||||||||||||| | || |||||||    
T  11032163 gtgttgagagtccatgataagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcc 11032251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 464
Target Start/End: Original strand, 50827022 - 50827121
Alignment:
Q  365 aaaaataattaagtg-ttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctccttt 463  Q
    |||||||||| |||| |||| |||  ||||||| | | ||||||| |||| |||||||| |||  | ||| ||||||||||||||||| |||||||||||    
T  50827022 aaaaataatttagtggttgagagagtatgataaaaatatgtttctcatttaatctaatggacatgatcaactttcccatggtgggaaa-aactctccttt 50827120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 25067794 - 25067889
Alignment:
Q  377 gtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||| |||| || |||||||||| |||||||||||||| |||| |||||||||| ||||| |||||||||||||| | |||||||| ||||||    
T  25067794 gtgttgagagactataataagattgtatttcttatttgatccaatggacaaaaacaactttcctatggtgggaaacaaatatcctttcccatgcta 25067889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 472
Target Start/End: Complemental strand, 25067236 - 25067144
Alignment:
Q  380 ttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||| ||||||| ||||| |||||||| | ||||||||||||| |||||||||| | |||||| |||| |||||| | || ||||| ||||||    
T  25067236 ttgagagaccataataagcttgtgtttttcatttgatctaatggacaaaaacaactctcccatagtggaaaacaagtatcatttcccatgcta 25067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 931030 - 930948
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaa--ttttcccatggtgggaaacaact 456  Q
    |||||||| ||||||| |||| |||||||| | ||||| ||||||||  ||||||| |  |||||||||||||||||| ||||    
T  931030 agtgttgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaacttttcccatggtgggaaaaaact 930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 3542885 - 3542830
Alignment:
Q  410 atttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||| ||||||||||||  | ||| ||||||||||||||||| |||||||||||||    
T  3542885 atttaatctaatgaacatgatcaactttcccatggtgggaaaaaactctcctttcc 3542830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 10608262 - 10608338
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaa 451  Q
    |||| ||| ||||||| |||| |||||||| | ||||| ||||||||  ||||||| || |||||||||||||||||    
T  10608262 agtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaa 10608338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 27352 - 27237
Alignment:
Q  350 gtggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtggga 449  Q
    ||||||||||  || |||||||||| |||||||| |||  ||||||||| |||||| || |||| |||||||| |||  | ||| ||||||||| |||||    
T  27352 gtggaagatagtgtaaaaaataatttagtgttgagagagtatgataagaatgtgttcctcatttaatctaatggacatgatcaactttcccatgatggga 27253  T
Q  450 aacaactctcctttcc 465  Q
    || |||||||||||||    
T  27252 aagaactctcctttcc 27237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 472781 - 472715
Alignment:
Q  1 tctaaattgaccattgattttagtttgtgttccttaatgaaactcacagtttttaatttataggaaa 67  Q
    ||||||||||||||| |||||||||||||||||||||  || |||||||||| ||| ||||||||||    
T  472781 tctaaattgaccattaattttagtttgtgttccttaacaaagctcacagtttgtaaattataggaaa 472715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 33002063 - 33001948
Alignment:
Q  350 gtggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtggga 449  Q
    ||||||||||  || |||||||||| |||||||| |||  ||||||||| ||| || || |||| |||||||| |||  | ||| ||| |||||||||||    
T  33002063 gtggaagatagtgtaaaaaataatttagtgttgagagaatatgataagaatgtattcctcatttaatctaatggacatgatcaacttttccatggtggga 33001964  T
Q  450 aacaactctcctttcc 465  Q
    || |||||||||||||    
T  33001963 aagaactctcctttcc 33001948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 472
Target Start/End: Complemental strand, 4789591 - 4789529
Alignment:
Q  410 atttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||  ||| || || ||||||||||||||||||||||| ||||||| ||||||    
T  4789591 atttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgcta 4789529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 472
Target Start/End: Complemental strand, 42650886 - 42650766
Alignment:
Q  351 tggaagataaagtgaaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaa 450  Q
    |||||||||| || |||||||||  |||||||| |||| ||||||| ||| |||| ||||  ||||||||||  || ||| || ||||||||||||  ||    
T  42650886 tggaagataatgt-aaaaataatctagtgttgaaagactatgataatattatgttccttacatgatctaatgctcataaaaaactttcccatggtgaaaa 42650788  T
Q  451 acaactctcctttcctatgcta 472  Q
    |||| || ||||||| ||||||    
T  42650787 acaattcccctttcccatgcta 42650766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 465
Target Start/End: Complemental strand, 6804027 - 6803964
Alignment:
Q  402 tgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||||||||||||||| |||| ||||||| || ||||| ||||| ||||||||||  |||||||    
T  6804027 tgtttcttatttgatccaatggacaaaaagaaatttcctatggtaggaaacaacttccctttcc 6803964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 1970516 - 1970553
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  1970516 tttcccatggtgggaaacaactctccattcccatgcta 1970553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 472
Target Start/End: Original strand, 49161740 - 49161847
Alignment:
Q  365 aaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttc 464  Q
    |||||||||  |||||||| |||| ||||||| ||| |||| ||||  ||||||||||  || ||| || |||||||||||||||||||| || ||||||    
T  49161740 aaaaataatctagtgttgaaagactatgataatattatgttccttacatgatctaatgctcataaaaaactttcccatggtgggaaacaattcccctttc 49161839  T
Q  465 ctatgcta 472  Q
    | ||||||    
T  49161840 ccatgcta 49161847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 36750414 - 36750469
Alignment:
Q  410 atttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||| ||||||||||||  | ||| ||||||||||||||||| |||||||||||||    
T  36750414 atttaatctaatgaacatgatcaactttcccatggtgggaaagaactctcctttcc 36750469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 41755570 - 41755515
Alignment:
Q  410 atttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||| ||||||||||||  | |||||||| |||||||||||| |||||||||||||    
T  41755570 atttaatctaatgaacatgatcaattttctcatggtgggaaaaaactctcctttcc 41755515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 41756409 - 41756466
Alignment:
Q  410 atttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttccta 467  Q
    |||| ||||||||||||  | ||| ||||||||| ||||||| |||||||||||||||    
T  41756409 atttaatctaatgaacatgatcaactttcccatgatgggaaagaactctcctttccta 41756466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 43768072 - 43768035
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  43768072 tttcccatggtgggaaacaactctccattcccatgcta 43768035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Complemental strand, 45297618 - 45297565
Alignment:
Q  412 ttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||||||||||   ||||| || ||||||||| |||||||||||||||||||||    
T  45297618 ttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcc 45297565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 33968250 - 33968190
Alignment:
Q  412 ttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||  ||||||  |||||||||||||||||||||| |  ||||||| ||||||    
T  33968250 ttgatctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttcccatgcta 33968190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 36750177 - 36750061
Alignment:
Q  350 gtggaagataaagtgaaaaataattaagtg-ttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtggg 448  Q
    ||||||||||  || |||||||||  |||| |||| |||  ||||||||| ||| || || |||| ||||||||||||  | ||| ||| |||||||||     
T  36750177 gtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatgaacatgatcaacttttccatggtgga 36750078  T
Q  449 aaacaactctcctttcc 465  Q
    ||| |||||||||||||    
T  36750077 aaagaactctcctttcc 36750061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 465
Target Start/End: Complemental strand, 34371555 - 34371478
Alignment:
Q  388 ccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    ||||||||| ||| ||||||||| |  |||||||| ||||||| || |||||||||||||||||||| || |||||||    
T  34371555 ccatgataaaattatgtttcttactcaatctaatggacaaaaaaaactttcccatggtgggaaacaattcccctttcc 34371478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 464
Target Start/End: Complemental strand, 23383401 - 23383327
Alignment:
Q  390 atgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttc 464  Q
    ||||||||| ||||||  | |||||||| |||| | ||||  || ||||||||||||||||||||||||||||||    
T  23383401 atgataagagtgtgttcttcatttgatcgaatggataaaattaactttcccatggtgggaaacaactctcctttc 23383327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 25655581 - 25655662
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaacaact 456  Q
    |||| ||| ||||||| |||| |||||||||| ||||| ||||||||  ||||||| || ||||||||||||||||| ||||    
T  25655581 agtgctgagagaccataataacattgtgtttcctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaact 25655662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 465
Target Start/End: Complemental strand, 11680382 - 11680292
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaacaactctcctttcc 465  Q
    |||| ||| ||||||| |||| |||||||| | ||||| ||||||||  ||||||| || ||||||||||||||||| ||||  |||||||    
T  11680382 agtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcc 11680292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 465
Target Start/End: Complemental strand, 11688661 - 11688571
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaacaactctcctttcc 465  Q
    |||| ||| ||||||| |||| |||||||| | ||||| ||||||||  ||||||| || ||||||||||||||||| ||||  |||||||    
T  11688661 agtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcc 11688571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 472
Target Start/End: Complemental strand, 25970184 - 25970115
Alignment:
Q  402 tgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||| |||| |||||||| ||| |  ||| ||||||||||||||||||||||| ||||||| ||||||    
T  25970184 tgtttctcatttaatctaatggacatat-caactttcccatggtgggaaacaactcccctttcccatgcta 25970115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 465
Target Start/End: Complemental strand, 30808667 - 30808637
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcc 465  Q
    |||||||||||||||||||||||||||||||    
T  30808667 tttcccatggtgggaaacaactctcctttcc 30808637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 39429939 - 39429976
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  39429939 tttcccatggtgggaaacaactctccattcccatgcta 39429976  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 46764358 - 46764277
Alignment:
Q  376 agtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaacaact 456  Q
    |||| ||| ||||||| |||| |||||||||| ||||| || |||||  ||||||| || ||||||||||||||||| ||||    
T  46764358 agtgctgagagaccataataacattgtgtttcctatttaatttaatggtcaaaaactaactttcccatggtgggaaaaaact 46764277  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 47326791 - 47326828
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  47326791 tttcccatggtgggaaacaactttcctttcccatgcta 47326828  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 47341587 - 47341624
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  47341587 tttcccatggtgggaaacaactttcctttcccatgcta 47341624  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 55514356 - 55514393
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  55514356 tttcccatggtgggaaacaactttcctttcccatgcta 55514393  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 10425061 - 10425093
Alignment:
Q  435 tttcccatggtgggaaacaactctcctttccta 467  Q
    ||||||||||||||||| |||||||||||||||    
T  10425061 tttcccatggtgggaaagaactctcctttccta 10425093  T

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Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 137 - 192
Alignment:
Q  410 atttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcc 465  Q
    |||| |||||||||||| || ||| ||||||||||||||||| |||||||||||||    
T  137 atttaatctaatgaacataatcaactttcccatggtgggaaagaactctcctttcc 192  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 413 - 472
Target Start/End: Original strand, 15602800 - 15602859
Alignment:
Q  413 tgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  15602800 tgatctaatggtcaaaaaatattttcccatggtgggaaacaacttccctttcctatgcta 15602859  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 34617719 - 34617662
Alignment:
Q  415 atctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttcctatgcta 472  Q
    ||||||||  |||||| || |||||||||||||||||||| | |||||||| ||||||    
T  34617719 atctaatggtcaaaaataactttcccatggtgggaaacaattatcctttcccatgcta 34617662  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 465
Target Start/End: Original strand, 4479634 - 4479734
Alignment:
Q  365 aaaaataattaagtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaacaattttcccatggtgggaaacaactctcctttc 464  Q
    |||||||||| ||||| || |||  ||||||||| | |||| || |||| |||||||| |||  |  || |||||||||||| |||| ||||||||||||    
T  4479634 aaaaataatttagtgtggagagagtatgataagaatatgttcctcatttaatctaatggacatgattaactttcccatggtgagaaagaactctcctttc 4479733  T
Q  465 c 465  Q
    |    
T  4479734 c 4479734  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 451
Target Start/End: Complemental strand, 17444 - 17369
Alignment:
Q  377 gtgttgatagaccatgataagattgtgtttcttatttgatctaatgaacaaaaac-aattttcccatggtgggaaa 451  Q
    ||||||| |||||||||||| |||||||| | ||||||||| ||||   |||||| || |||||||||||||||||    
T  17444 gtgttgaaagaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatggtgggaaa 17369  T

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