View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_39 (Length: 470)
Name: NF11930_low_39
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 47553232 - 47552794
Alignment:
| Q |
19 |
ttgggtgggtgaaaactgaaaacacaagatacgatttgtagctagatgcctacatatctcgacacaacctaggtgtgcagatagaaaataaatgatacaa |
118 |
Q |
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| T |
47553232 |
ttgggtgggtgaaaactgaaaacacaagatacgatttgtagctagatgcctacatatctcgacacaacctaggagtgcagatagaaaataaattatacaa |
47553133 |
T |
|
| Q |
119 |
atgtagcaacaaaattacggcacacagcacagtggaaagagagttaaattggaacatgacgttgtacatgtcctccgtcctagcagcggggtccgaacgg |
218 |
Q |
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| T |
47553132 |
atgtagcaacaaaattacggcacacagcacagtggaaagagagttaaattggaacatgacgttgtacatgtcctccgtcctagcagcggggtccgaacgg |
47553033 |
T |
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| Q |
219 |
ggtcatcacgagacagacacagactataccctaacctaacctacaaaaattgagtaaaccatactataagtggagttgattgaactgtgggaccatacta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47553032 |
ggtcatcacgagacagacacagactataccctaacctaacctacaaaaattgagtaaaccatactataagtggagttgattgaactgtgggaccatacta |
47552933 |
T |
|
| Q |
319 |
aggaccgtgaaagcatggtgcatgtgatcattttcctccaaaggcaaataaaggtgtaccttagaacgggacggggttgatatttgatcaaatatgtcac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47552932 |
aggaccgtgaaagcatggtgcatgtgatcattttcctccaaaggcaaataaaggtgtaccttagaacgggacggggttgatatttgatcaaatatgtcac |
47552833 |
T |
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| Q |
419 |
cttcatggggtcacaattattcaaatataacgtgcttct |
457 |
Q |
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| T |
47552832 |
cttcatggggtcacaattattcaaatataacgtgcttct |
47552794 |
T |
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