View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_41 (Length: 456)
Name: NF11930_low_41
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 10636981 - 10636754
Alignment:
| Q |
7 |
ttttgtacttatatattcaactatatttagtttattgacaaatcaattatttggagaatctgttacgtaacgtatattggaatttgatttgtgggtcatt |
106 |
Q |
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| T |
10636981 |
ttttgtacttatatattcaactatatttagtttattgccaaataaattatttggagaatctgttacgtaacgtatattggaatttgatttgtgggtcatt |
10636882 |
T |
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| Q |
107 |
ctaacggaatcaagggtatagattcaaaacaggaaatttttgccaggaatatatatgaatgatgcaatggaatgaagccaaattttggtagacataaagc |
206 |
Q |
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| T |
10636881 |
ctaacggaatcaagggtatagattcaaaacaggaaatttttgccaggaatatatatgaatgatgcaatggaatgaagccaaattttggtagacataaagc |
10636782 |
T |
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| Q |
207 |
aaaattaaattgtttaaaaatttaatga |
234 |
Q |
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| T |
10636781 |
aaaattaaattgtttaaaaatttaatga |
10636754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 10636598 - 10636668
Alignment:
| Q |
262 |
atataactgaataaatctattagagtatatcttactataataacacacttattgagaaaaatcattccaaa |
332 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10636598 |
atatacctgaataaatctattagagtatatcttactataataacacacttattgagaaaaatcattccaaa |
10636668 |
T |
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