View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_46 (Length: 423)
Name: NF11930_low_46
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 40 - 407
Target Start/End: Complemental strand, 52050873 - 52050506
Alignment:
| Q |
40 |
tctattatgttttattaggtatgaattaaaattatgtttaatgtttgctttcacatgcaatgtcttaaaattcattaaatgtgcaataacacactttcta |
139 |
Q |
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| T |
52050873 |
tctattatgttttattaggtatgaattaaaattatgtttaatgtttgctttcacatgcaatgtcttaaaattcattaaatgtgcaataacacactttcta |
52050774 |
T |
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| Q |
140 |
taaatttatgcaaaatcaaatttcattctcctaaagcaattgaaattcgcttttgcagaaaacgttttgatgaagtttacatatatggagatatataaag |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52050773 |
taaatttatgcaaaatcaaatttcattctcctaaagcaattgaaattcgcttttgcagaaaacgttttgatgaagtttgcatatatggagatatataaag |
52050674 |
T |
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| Q |
240 |
aagctgttgtgtcatataaatatacaaattaattcaaagaatctgaaagtaatatttgtcgtcaagcaaagttttcatagaaagagaaagattgaggttg |
339 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52050673 |
aagctgttgtgtcatacaaatatacaaattaattcaaagaatctgaaagtaatatttgtcgtcaagcaaagttttcatagaaagagaaagattacggttg |
52050574 |
T |
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| Q |
340 |
aacaaagaacaatggacttccacaatcttttcctgtttttgatgttacaattcatcctggttcttggt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050573 |
aacaaagaacaatggacttccacaatcttttcctgtttttgatgttacaattcatcctggttcttggt |
52050506 |
T |
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