View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_49 (Length: 421)
Name: NF11930_low_49
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 10495255 - 10494865
Alignment:
| Q |
21 |
aaaagaagttgaaacgcagcagcagcagccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttcagaaatgagga |
120 |
Q |
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| T |
10495255 |
aaaagaagttgaaacgcagcagcagcaaccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttccgaaatgagga |
10495156 |
T |
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| Q |
121 |
tgactgagagatactggctatacgccggtgatattcaaaagagcaaggaagctcaaaaagaaacaaagaaaattgacaagttctataagtcttatcataa |
220 |
Q |
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| T |
10495155 |
tgactgagagatactggctatacgccggtgatattcaaaagagcaaggaagctcaaaaagaaacaaagaaaattgaaaagttctataagtcttatcataa |
10495056 |
T |
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| Q |
221 |
aaatcagtcatggcggaatcttttcaatcagaatcagggaggtcgacgcaatgttcgaatgaactggatgtctaatcccatttcccattctatccctgca |
320 |
Q |
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| T |
10495055 |
aaatcagtcatggcggaatcttttcaatcagaatcagggaggtcgacaccatgttcgaatgaactggatgtctaatcccatttcccattctatccctgca |
10494956 |
T |
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| Q |
321 |
gatatcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttcctttcctgcattaattcacattttctctgcttct |
411 |
Q |
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| T |
10494955 |
gatatcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttcttttcctgcattagttcacattttctctgcttct |
10494865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 10509450 - 10509329
Alignment:
| Q |
31 |
gaaacgcagcagcagcagccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttcagaaatgaggatgactgagag |
130 |
Q |
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||||||||||||||||| |||||||||| |||||| |||||||||| ||| ||||||| ||||||||| | |||||||| | |||||||||||||||| |
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| T |
10509450 |
gaaacgcagcagcagcaaccatgtctgagccaatgaagcagattcgaaacatctggatctctggtctccttgatccttccaaggtgaggatgactgagag |
10509351 |
T |
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| Q |
131 |
atactggctatacgccggtgat |
152 |
Q |
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||||||||| ||| |||||||| |
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| T |
10509350 |
atactggctctacaccggtgat |
10509329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 7476237 - 7476285
Alignment:
| Q |
355 |
tactaatttaatcatacactttcctttcctgcattaattcacattttct |
403 |
Q |
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||||||||||||| || | |||||||| |||||||| |||||||||||| |
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| T |
7476237 |
tactaatttaatcttagagtttccttttctgcattatttcacattttct |
7476285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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