View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_5 (Length: 864)
Name: NF11930_low_5
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Complemental strand, 35252974 - 35252369
Alignment:
| Q |
1 |
gttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttataca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35252974 |
gttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcattaagtcccatctatatctctgtt-aagtaaatgttacagaggttataca |
35252876 |
T |
|
| Q |
101 |
gttagactcagtcatagttgaacctattaaaagtataaaagtatacgatgtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252875 |
gttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgc |
35252776 |
T |
|
| Q |
201 |
ttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgatgtattaattactggactagcagctactacggcgcgaagtgaat |
300 |
Q |
| |
|
||||||||||||| | ||||||| | ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252775 |
ttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgtattaattactggactagcagctactacggcgcgaagtgaat |
35252676 |
T |
|
| Q |
301 |
tcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagttctagttaatgtctctgttctttggtgtaaattcctccactacttca |
400 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252675 |
tcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagtaaatgtctctgttctttggtgtaaattcctccactacttca |
35252576 |
T |
|
| Q |
401 |
gtttctaagatttgttagatgatctttgtgtatacgtactccttgtcttgtaagctctagtcagtgaaagaaaaaattgttgttgattgatagcagtata |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252575 |
gtttctaagatttgttagatgatctttgtgtatatgtactccttgtcttgtaagctctagtcagtgaaagaaaaaattgttgttgattgatagcagtata |
35252476 |
T |
|
| Q |
501 |
gatgtaattaaataaaacatgtctttgtttttcaattgaaatgttgatgaaattatgatgtaataatcaaatggaaatgactaatctataagtaacagaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35252475 |
gatgtaattaaataaaacatgtctttgtttttcaattgaaatgttgatgaaattatgatgtaataatcaaatggaaatgactaatctataagtaacagaa |
35252376 |
T |
|
| Q |
601 |
gaaaaat |
607 |
Q |
| |
|
||||||| |
|
|
| T |
35252375 |
gaaaaat |
35252369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 35240723 - 35240093
Alignment:
| Q |
1 |
gttgttgctggttttcaggtaaacacttccctgcgcttctattat--gatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttata |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35240723 |
gttgttgctggttttcaggtaaactcttccctctgcttctattatatgattgttgtgtcccatctatatctccgtttaagtaaatgttacagaggtta-- |
35240626 |
T |
|
| Q |
99 |
cagttagactcagtcatagttgaacctattaaaagtataaaagtatacgatgtggttgcataaatagtaagtaaataatctgtggacaacttattgcagt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35240625 |
cagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagt |
35240526 |
T |
|
| Q |
199 |
gcttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgatgtattaattactggactagcagctactacggcgcgaagtga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35240525 |
gcttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgatgtattaattactggactagcagctactacagcgcgaagtga |
35240426 |
T |
|
| Q |
299 |
attcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagttctagttaatgtctctgttctttggtgtaaattcctccactactt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35240425 |
attcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagttctagttaatgtctctgttatttggtgtaaattcctccactactt |
35240326 |
T |
|
| Q |
399 |
cagtttctaagatttgttagatgatctttgtgtatacgtactccttgtcttgtaagctctagtca-gt----gaaagaaaaaattgttgttgattgatag |
493 |
Q |
| |
|
|||| | ||||||||||||||| | ||||||| ||| ||||||| ||||||| || |||| ||| ||||| |||||||||| |
|
|
| T |
35240325 |
cagtgtttaagatttgttagataa---ttgtgta-----------tgttttgtaag--ctagtcacgtagtggaaaaaaataattgctgttgattgaggc |
35240242 |
T |
|
| Q |
494 |
cagtatagatgtaattaaataaaacatgtctttgtttttcaattgaaatgttgatgaaattatga-------tgtaataatcaaatggaaatgactaatc |
586 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
35240241 |
cagtatagatgtaatcaaataaaacatgtctttgtttttcaatggaaatgttcctgaaattgtgatgtaaattgtaataatcaaatggaaatgactcatg |
35240142 |
T |
|
| Q |
587 |
tataagtaacagaagaaaaattaagggcttctaatcatgcttttctatattatagt |
642 |
Q |
| |
|
| ||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
35240141 |
t----gtaacagaagaaaaatttggggcttc---tcatgcttttctatattatagt |
35240093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 161 - 439
Target Start/End: Complemental strand, 35246027 - 35245749
Alignment:
| Q |
161 |
aatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgatgta |
260 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |||||| | || ||| | || ||||||| |||||||||| || |
|
|
| T |
35246027 |
aatattaagtaaataatcttcggacaacttattgcagtgcttggaatggttgattattgagaacgggcaaagatttaataaaggaagtgcctctgatata |
35245928 |
T |
|
| Q |
261 |
ttaattactggactagcagctactacggcgcgaagtgaattcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagttctagtt |
360 |
Q |
| |
|
| ||||||||||||||||||| | ||||||| |||||||||| |||||||||| ||||||| | ||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
35245927 |
tcaattactggactagcagcttcaacggcgcaaagtgaattccatattgcatccgctagcactgattctatggtgaagctatggaaatgaaattctagtt |
35245828 |
T |
|
| Q |
361 |
aatgtctctgttctttggtgtaaattcctccactacttcagtttctaagatttgttagatgatctttgtgtatacgtac |
439 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||| |||| |
|
|
| T |
35245827 |
aatgtctctgtgctatggtgtaaattcctccactacttcagtttttaagatttgttggataatctttgtttatatgtac |
35245749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 481 - 641
Target Start/End: Complemental strand, 35245724 - 35245564
Alignment:
| Q |
481 |
tgttgattgatagcagtatagatgtaattaaataaaacatgtctttgtttttcaattgaaatgttgatgaaattatgatgtaataatcaaatggaaatg- |
579 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||||||| || || |||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
35245724 |
tgttgattgaggccagtatagacgtaatcaaataaaacatgtctttgtttctcgatggaaatgttcatgaaattacgatgtaataatcaaatggaaatgt |
35245625 |
T |
|
| Q |
580 |
act-aatctataagtaacagaagaaaaattaagggcttctaatcatgcttttctatattatag |
641 |
Q |
| |
|
||| || ||| ||||||| || ||| ||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
35245624 |
actgcatgtat-agtaacaaaataaagattaagggcttctcatcacg-ttttctatattatag |
35245564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 573 - 641
Target Start/End: Original strand, 38411258 - 38411326
Alignment:
| Q |
573 |
ggaaatgactaatctataagtaacagaagaaaaattaagggcttctaatcatgcttttctatattatag |
641 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
38411258 |
ggaaatgaccaatctataagtaacggaagaaaagttaagggcttctcatcatgcttttctatattatag |
38411326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 35246341 - 35246229
Alignment:
| Q |
9 |
tggttttcaggtaaacacttccctgcgcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttatacagttagact |
108 |
Q |
| |
|
||||||||||||||| |||| ||| ||| ||||||||||| | | || ||||||||||||| ||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
35246341 |
tggttttcaggtaaatactttcctctgctactattatgatcgt-gtgtgccatctatatctccatttaagtaactgttacagaggt--tacacttagact |
35246245 |
T |
|
| Q |
109 |
cagtcatagttgaacc |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35246244 |
cagtcatagttgaacc |
35246229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 35285893 - 35285834
Alignment:
| Q |
328 |
ctgtggtgaagatatggaaatgaagttctagttaatgtctctgttctttggtgtaaattc |
387 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
35285893 |
ctgtggtgaacatatggaaatgaagttctagttgatgtctctattctttggtgtaaattc |
35285834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 35282566 - 35282471
Alignment:
| Q |
331 |
tggtgaagatatggaaatgaagttctagttaatgtctct-gttctttggtgtaaattcctccactacttcagtttctaagatttgttagatgatct |
425 |
Q |
| |
|
||||||| |||| |||||||||||||||| |||||| | |||||||||||||||||||||| || ||||||||| | |||||||||||| |||| |
|
|
| T |
35282566 |
tggtgaacatatcgaaatgaagttctagtaaatgtcagttgttctttggtgtaaattcctcccctgcttcagttttgaggatttgttagataatct |
35282471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 35276983 - 35276884
Alignment:
| Q |
327 |
tctgtggtgaagatatggaaatgaagttctagttaatgtc-tctgttctttggtgtaaattcctccactacttcagtttctaagatttgttagatgatct |
425 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||| |||||||||||||||| |||||| || ||||| ||| | |||||||||||| |||| |
|
|
| T |
35276983 |
tctgtggtgaacatatggaaatgaagttctggtaaatgtcagttgttctttggtgtaaactcctcccctgcttcaattttgaggatttgttagataatct |
35276884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 603 - 648
Target Start/End: Complemental strand, 35274697 - 35274652
Alignment:
| Q |
603 |
aaaattaagggcttctaatcatgcttttctatattatagtaggata |
648 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
35274697 |
aaaattaagggcttctcatcatgcttttctatattataggaggata |
35274652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35286540 - 35286411
Alignment:
| Q |
1 |
gttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttataca |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||| |||||| |||| | || | | ||||| | |||| |||| |||||| ||||| |||| |
|
|
| T |
35286540 |
gttgttggtggttttcaggtaaactcttccctgtgcttccattatgttcatggtgtttcttttatatatacttttatgtaactgttactgaggt--taca |
35286443 |
T |
|
| Q |
101 |
gttagactcagtcatagttgaacctattaaaa |
132 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |
|
|
| T |
35286442 |
tttagcctcagtcatagttgaaccttttaaaa |
35286411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 35237386 - 35237335
Alignment:
| Q |
333 |
gtgaagatatggaaatgaagttctagttaatgtctctgttctttggtgtaaa |
384 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
35237386 |
gtgaaaatatggaaatgaagttccagttaatgtctttgttccttggtgtaaa |
35237335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 35277159 - 35277098
Alignment:
| Q |
154 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgact |
215 |
Q |
| |
|
||||||| || | |||||||||||||||| |||| ||||||||| || |||||||||||||| |
|
|
| T |
35277159 |
ttgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgact |
35277098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 35270105 - 35270037
Alignment:
| Q |
154 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgactgttgaga |
222 |
Q |
| |
|
||||||||| || ||||||||||| |||| |||| ||||| |||||| |||||||||||| | |||||| |
|
|
| T |
35270105 |
ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga |
35270037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35277489 - 35277398
Alignment:
| Q |
1 |
gttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagag |
92 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||| ||||||||||| | ||| | |||||||||| ||||||| | ||||| |||| |
|
|
| T |
35277489 |
gttgttggcggttttcaggtaaactcttccctctgcttccattatgatcatagtgtctcttctatatctccttttaagtgactgttatagag |
35277398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 35270826 - 35270789
Alignment:
| Q |
11 |
gttttcaggtaaacacttccctgcgcttctattatgat |
48 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
35270826 |
gttttcaggtaaacacttccctccgcttccattatgat |
35270789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 35282746 - 35282685
Alignment:
| Q |
154 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgact |
215 |
Q |
| |
|
|||||||||| | ||| || ||||||||| |||| |||||||||||| ||||||||| |||| |
|
|
| T |
35282746 |
ttgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggact |
35282685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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