View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_53 (Length: 416)
Name: NF11930_low_53
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 154 - 398
Target Start/End: Original strand, 5586182 - 5586427
Alignment:
| Q |
154 |
ataacttttgagattattcattttgtgctgcgaaagacaatatcatattttctttgacaggagaaagacaataaaattaagatatttattatattattta |
253 |
Q |
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| T |
5586182 |
ataacttttgagattattc--tttgtgctgcgaaagacaatatcatattttctttgacaggagaaagacaataaaattaagatatttattatattattta |
5586279 |
T |
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| Q |
254 |
ctnnnnnnn-taatgacttgtgaactaaatctctaaattgatgaatgatggataaaataaaattagatatgt--tgggttgatagaagacctttagagga |
350 |
Q |
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|| | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
5586280 |
ctaaataaaattatgacttgtgaactaaatgtctaaattgatgaattatggataaaataaaattagatatatgctgggttgatagaagacctttagagga |
5586379 |
T |
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| Q |
351 |
acttgttggtgagcttgtgaaaaacaattttattagtgttagactaac |
398 |
Q |
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| T |
5586380 |
acttgttggtgagcttgtgaaaaacaattttattagtgttagactaac |
5586427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 154 - 398
Target Start/End: Original strand, 5591143 - 5591388
Alignment:
| Q |
154 |
ataacttttgagattattcattttgtgctgcgaaagacaatatcatattttctttgacaggagaaagacaataaaattaagatatttattatattattta |
253 |
Q |
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| T |
5591143 |
ataacttttgagattattc--tttgtgctgcgaaagacaatatcatattttctttgacaggagaaagacaataaaattaagatatttattatattattta |
5591240 |
T |
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| Q |
254 |
ctnnnnnnn-taatgacttgtgaactaaatctctaaattgatgaatgatggataaaataaaattagatatgt--tgggttgatagaagacctttagagga |
350 |
Q |
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| T |
5591241 |
ctaaataaaattatgacttgtgaactaaatgtctaaattgatgaattatggataaaataaaattagatatatgctgggttgatagaagacctttagagga |
5591340 |
T |
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| Q |
351 |
acttgttggtgagcttgtgaaaaacaattttattagtgttagactaac |
398 |
Q |
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| T |
5591341 |
acttgttggtgagcttgtgaaaaacaattttattagtgttagactaac |
5591388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 5585405 - 5585510
Alignment:
| Q |
7 |
ggagcagagactaaggagtagtttggtggaggagttggtgtagaagtcattgtggnnnnnnngagagaacaatggtttgtgttggtattaagtgaatgct |
106 |
Q |
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| T |
5585405 |
ggagcagggactaaggagtagtttggtggaggagttggtgtagaagtcattgtggaaaaaaagagagaacaatggtttgtgttggtattaagtgaatgct |
5585504 |
T |
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| Q |
107 |
ttattg |
112 |
Q |
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|||||| |
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| T |
5585505 |
ttattg |
5585510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 5590366 - 5590471
Alignment:
| Q |
7 |
ggagcagagactaaggagtagtttggtggaggagttggtgtagaagtcattgtggnnnnnnngagagaacaatggtttgtgttggtattaagtgaatgct |
106 |
Q |
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| T |
5590366 |
ggagcagggactaaggagtagtttggtggaggagttggtgtagaagtcattgtggaaaaaaagagagaacaatggtttgtgttggtattaagtgaatgct |
5590465 |
T |
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| Q |
107 |
ttattg |
112 |
Q |
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|||||| |
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| T |
5590466 |
ttattg |
5590471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 5604876 - 5604820
Alignment:
| Q |
3 |
aggaggagcagagactaaggagtagtttggtggaggagttggtgtagaagtcattgt |
59 |
Q |
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| T |
5604876 |
aggagcagcagggagtgaggagtagtttggtggaggggttggtgtagaagtcattgt |
5604820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 5603881 - 5603841
Alignment:
| Q |
214 |
gagaaagacaataaaattaagatatttattatattatttac |
254 |
Q |
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| T |
5603881 |
gagaaagacaatagaattaaaatatttattatattatttac |
5603841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 10764157 - 10764226
Alignment:
| Q |
329 |
ttgatagaagacctttagaggaacttgttggtgagcttgtgaaaaacaattttattagtgttagactaac |
398 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
10764157 |
ttgatagaagacctttaaaggaacttgttggtgagcttgtgaaaaacaatttcaattgtgttagattaac |
10764226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 38324671 - 38324738
Alignment:
| Q |
331 |
gatagaagacctttagaggaacttgttggtgagcttgtgaaaaacaattttattagtgttagactaac |
398 |
Q |
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| T |
38324671 |
gatagaatacccttaaaggaacttgttggtgagcttgtgaaaaacaggttcaattgtgttagactaac |
38324738 |
T |
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