View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_54 (Length: 413)
Name: NF11930_low_54
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 3019470 - 3019073
Alignment:
| Q |
1 |
tgttgatggcaaaggaaaggccaggccctgtgagattgaggtattgtagtgcaccaataatctgtctattaagagtagagtctgcagcagctgtgccatc |
100 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3019470 |
tgttgatggcaaaggaaaggtcaggccttgtgagattgaggtattgtagtgcaccaataatctgtctataaagagtagagtctgcagcagctgtgccatc |
3019371 |
T |
|
| Q |
101 |
atttagtgtgagtgttgaagttgtggacagaggtgtatatgtaggttttgctgcatccatatcaaacctttgaaggatatctctaatgaatttatgttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019370 |
atttagtgtgagtgttgaagttgtggacagaggtgtatatgtaggttttgctgcatccatatcaaacctttgaaggatatctctaatgaatttatgttga |
3019271 |
T |
|
| Q |
201 |
gataggaataagcctgtttttgaaggaataagctctattccgagaaagtagtgtagtgttcccatatgtttgagagaaaaccggttggagagagattgaa |
300 |
Q |
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| T |
3019270 |
gataggaataagactgtttttgaaggaataagctctattccgagaaagtagtgtggtgttcccatatgtttgagagaaaaccggttggagagagattgaa |
3019171 |
T |
|
| Q |
301 |
taaagtgatgaagaaatgatgcatcatttcccgttaagagaagatcatcaacataaaccaaaaagtatgcaagagtagtacctgaggcatatatgaag |
398 |
Q |
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| T |
3019170 |
taaagtgatgaagaaatgatgcatcatttcccgttaaaagaagatcatcaacataaaccaaaaagtatgcaagagtagtacctgaggcatatatgaag |
3019073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2662403 - 2662067
Alignment:
| Q |
1 |
tgttgatggcaaaggaaaggccaggccctgtgagattgaggtattgtagtgcaccaataatctgtctattaagagtagagtctgcagcagctgtgccatc |
100 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
2662403 |
tgttgatggcaaaggaaaggtcaggccttgtgagattgaagtattgtagtgcatcaataatctgtctataaagagtagagtctgcagcagttgtgccatc |
2662304 |
T |
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| Q |
101 |
atttagtgtgagtgttgaagttgtggacagaggtgtatatgtaggttttgctgcatccatatcaaacctttgaaggatatctctaatgaatttatgttga |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662303 |
atttagtgtgagtgttgaagttgtggacaaaggtgtatatgtaggttttgctgcatccatatcaaacctttgaaggatatctctaatgaatttatgttga |
2662204 |
T |
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| Q |
201 |
gataggaataagcctgtttttgaaggaataagctctattccgagaaagtagtgtagtgttcccatatgtttgagagaaaaccggttggagagagattgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2662203 |
gataggaataagcctgtttttgaaggaataagctctattccgagaaagtagtgtggtgttcccatatgtttgagagaaaaccggttggagaaagattgaa |
2662104 |
T |
|
| Q |
301 |
taaagtgatgaagaaatgatgcatcatttcccgttaa |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2662103 |
taaagtgatgaagaaatgatgcatcatttcccgttaa |
2662067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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