View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_55 (Length: 411)
Name: NF11930_low_55
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_55 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 41765749 - 41765350
Alignment:
| Q |
12 |
aacctgtgtatattgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacac |
111 |
Q |
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| T |
41765749 |
aacctgtgtatattgcttccaccactcttggacttgcaacctcccacccactaggacaaagacaaaacttgctttttctcaacatagcatagtaagacac |
41765650 |
T |
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| Q |
112 |
accctttggaaggtacttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaag |
211 |
Q |
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| T |
41765649 |
accctttggaaggtacttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaag |
41765550 |
T |
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| Q |
212 |
aaagccaaaattgatctcttagatggtgatggtccaccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactg |
311 |
Q |
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| T |
41765549 |
aaagccaaaattgatctcttagatggtgatggtccgccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactg |
41765450 |
T |
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| Q |
312 |
gcttgaattcctctgaggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactgcattcgagacctctggcccctgaaaatagaa |
411 |
Q |
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| T |
41765449 |
gcttgaatccctctgaggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactgcattcgagacctctggcccctgaaaatagaa |
41765350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 41757666 - 41757298
Alignment:
| Q |
12 |
aacctgtgtatattgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacac |
111 |
Q |
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| T |
41757666 |
aacctgtgtatattgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttcttaacatatcatagtaagacac |
41757567 |
T |
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| Q |
112 |
accctttggaaggtacttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaag |
211 |
Q |
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| T |
41757566 |
accctttggaaggtacttgtgaacttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaag |
41757467 |
T |
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| Q |
212 |
aaagccaaaattgatctcttagatggtgatggtccaccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactg |
311 |
Q |
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| T |
41757466 |
aaagccaaaactgatcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcag |
41757367 |
T |
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| Q |
312 |
gcttgaattcctctgaggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactg |
380 |
Q |
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| T |
41757366 |
gcttgaatccctctgatgtgttcgcattgcaaagcgctcggattgaatttttgtacaagtttggaactg |
41757298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 26973139 - 26973235
Alignment:
| Q |
38 |
cttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggtacttgtgaa |
134 |
Q |
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| T |
26973139 |
cttggactagccacctcataaccactaggacagagacagaacttgctctttctcagcatttcatagtaagaaacaccctttggaagatacttttgaa |
26973235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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