View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_58 (Length: 400)
Name: NF11930_low_58
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 43 - 387
Target Start/End: Original strand, 28279260 - 28279606
Alignment:
| Q |
43 |
gtttgaattctttctttgactgattgtattttattgtaatctttctaacacattttgtgctggaaagattcaggttaatcttatttcattttgatttgtt |
142 |
Q |
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| T |
28279260 |
gtttcaattctttctttgactgattgtattttattgtaatctttctaacacattttgtgccagaaagattcaggttaatcttatttcattttagtttgtt |
28279359 |
T |
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| Q |
143 |
nnnnnnnn-tcataagaaaacannnnnnnnaataattgtttattgtgtatataacgacacctaattcctctaaaaaacgacagcttatatgaaaaataga |
241 |
Q |
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| T |
28279360 |
aaaaaaaaatcataagaaaacatttttttgaataactgtttattgtgtatataacgacacctaattccactaaaaaacgacaccttatatgaaaaataga |
28279459 |
T |
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| Q |
242 |
aaatatatttatatgtgattttttatctatgctaaatgctaatccgtataatgataaccaccttatattatttacctaatatcatgaattaattcaggat |
341 |
Q |
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| T |
28279460 |
aaatatatttatatgtgattttttatctatgctaaatgctaatctgtataatgataaccaccttatattatttacctaatatcatgaattaattcaggat |
28279559 |
T |
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| Q |
342 |
gatcatcttaa-tcattaatattttgaaactcttaaacacttgttct |
387 |
Q |
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||||||||||| | |||||||||||||||||||| |||| ||||||| |
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| T |
28279560 |
gatcatcttaattgattaatattttgaaactcttcaacaattgttct |
28279606 |
T |
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