View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_6 (Length: 828)
Name: NF11930_low_6
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_6 |
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| [»] scaffold0504 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 348 - 809
Target Start/End: Original strand, 54632233 - 54632694
Alignment:
| Q |
348 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632233 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
54632332 |
T |
|
| Q |
448 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttaccgacccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaag |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632333 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttaccgacccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaag |
54632432 |
T |
|
| Q |
548 |
caatatgagatagttttggtcaatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaa |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632433 |
caatatgagatagttttggtcaatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaa |
54632532 |
T |
|
| Q |
648 |
atttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatg |
747 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632533 |
atttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatg |
54632632 |
T |
|
| Q |
748 |
tcgtaccgagcatattgaaatggccatagccagttttggccatcatttaccatttacttgat |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632633 |
tcgtaccgagcatattgaaatggccatagccagttttggccatcatttaccatttacttgat |
54632694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 54631879 - 54632201
Alignment:
| Q |
20 |
ggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactcttcaagttctagg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
54631879 |
ggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatgaaatctgaactcttcaacttctagg |
54631978 |
T |
|
| Q |
120 |
tgaataa-------------ctgactttttgaggacattgacagtgctttcatggaaaattctcaatagtatatgttgtccttctactacttaattgtat |
206 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631979 |
tgaagaagttcttttcttgactgactttttgaggacattgacagtgctttcatggaaaattctcaatagtatatgttgtccttctactacttaattgtat |
54632078 |
T |
|
| Q |
207 |
tttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgtaactgtggttcagaacttaacct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632079 |
tttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgtaactgtggttcagaacttaacct |
54632178 |
T |
|
| Q |
307 |
gttatgttaacaatctccttgct |
329 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
54632179 |
gttatgttaacaatctccttgct |
54632201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 52125432 - 52125333
Alignment:
| Q |
202 |
tgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgta-actgtggttcagaact |
300 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||||||||| |||||||| ||| | ||||||| |||||| |
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| T |
52125432 |
tgtattttgatgttaacggatgatgatattttatggtaggattcta-attctatcatgttttgaatgttatctatcactagtagaatgtggtttagaact |
52125334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 5e-86; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 495 - 802
Target Start/End: Complemental strand, 45313231 - 45312931
Alignment:
| Q |
495 |
acccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaagcaatatgagatagttttggtcaatgccatgcgtactcgtattaacaa |
594 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | || || ||||||||| |
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| T |
45313231 |
acccactgatgaatataaaataaagagatggttaacaatcaggtaagccaaagcaatatgagatggttttgttcaatgccatccatagtcatattaacaa |
45313132 |
T |
|
| Q |
595 |
tcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatcttt |
694 |
Q |
| |
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||||| |||||||||||||||| ||| |||| |||||||||||||||||||| |||||||||| ||||||| || |||| ||||||||||| | |
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| T |
45313131 |
tcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtg--------tgtaggtttcaaatctat |
45313040 |
T |
|
| Q |
695 |
atatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgtcgtaccgagcatattgaaatggccata--gccagttttggccatca |
792 |
Q |
| |
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|||| |||||||||||||||||| ||| || |||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
45313039 |
atatgtatttgaaaatcagtgac-ttgagctattctagttctgaattctgatgttgtacttagcatattgaaatggccatatttccagttttggccatca |
45312941 |
T |
|
| Q |
793 |
tttaccattt |
802 |
Q |
| |
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|||||||||| |
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| T |
45312940 |
tttaccattt |
45312931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 348 - 493
Target Start/End: Complemental strand, 45313418 - 45313279
Alignment:
| Q |
348 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
447 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45313418 |
tctatcatgtctaacttagatattccttctttgtttatcttctaatt------ttatgtttatcacgtctaataatggcattagagtaaatcatccttaa |
45313325 |
T |
|
| Q |
448 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
493 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313324 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
45313279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 45313595 - 45313481
Alignment:
| Q |
206 |
ttttgatattaacctatgatgatat------tttatggtaggattat----agtttctatcatcttttgaatgttgactatcacttgtaactgtggttca |
295 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
45313595 |
ttttgatattaacctatgatgatatgatatttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttca |
45313496 |
T |
|
| Q |
296 |
gaacttaacctgtta |
310 |
Q |
| |
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||||||||| ||||| |
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| T |
45313495 |
gaacttaacttgtta |
45313481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 39487197 - 39487130
Alignment:
| Q |
44 |
aagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactcttcaa |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| ||| ||||||| |
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| T |
39487197 |
aagcgtgctggtattacttttcctcgtccaagctggtggccggacgatatgaaatccgaaatcttcaa |
39487130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 45310405 - 45310338
Alignment:
| Q |
397 |
aatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaaagcacttaaatatttctt |
465 |
Q |
| |
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|||||||||||||||||||| |||||||||| || ||||||||| || ||||||||| || |||||||| |
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| T |
45310405 |
aatgttatgtttatcacgtgtaataatggcaataaagtaaatcagcc-taaagcactaaattatttctt |
45310338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 7968 - 8059
Alignment:
| Q |
20 |
ggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactcttcaa |
111 |
Q |
| |
|
|||||||||||||||||| || | |||||||| |||||||||||||||||||| || |||||| | ||||||||| |||||||||||||||| |
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| T |
7968 |
ggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttggtggtcggacgatatgaaatctgaactcttcaa |
8059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 8226 - 8267
Alignment:
| Q |
260 |
ttttgaatgttgactatcacttgtaactgtggttcagaactt |
301 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||||| |
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| T |
8226 |
ttttgaatgttgtctaacatttgtaactgtggttcagaactt |
8267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 18189444 - 18189535
Alignment:
| Q |
20 |
ggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactcttcaa |
111 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||||| |||| || |||||||| || |||||||| || |||||| ||||| |||||||||| |
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| T |
18189444 |
ggtcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggccggaggatatgaaatctcaactcttcaa |
18189535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 18189720 - 18189767
Alignment:
| Q |
254 |
atcatcttttgaatgttgactatcacttgtaactgtggttcagaactt |
301 |
Q |
| |
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||||| |||||||||||| ||| || |||||||||||||||||||||| |
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| T |
18189720 |
atcatgttttgaatgttggctaacatttgtaactgtggttcagaactt |
18189767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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